Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243786g00002 ATGGCGGATTTCGATGAATATGAGTACTTAGAGAAAGCAGTTGAGAATTCCGAGCTTAAGAAGGAGAAGGAAGCCACTAATGGAAGGAACGGAGCTGCCAAATCAGAAGAGAGAGGCTATAGTAGGAGTTCCAAGCATAAGGATGATCATGATGGTGGTGGTGGTGATGATGATGATAATGATGTTGATCGCCACTCCAAGCGTTCAAAATCTGGTGATGGTTCTCGTGGTGGTGATTACGATAAGCACAAGGAAAGAGGATCGTTGCATCGTCACTCCCGGTCCAGAGATGGAAACAGGGAGAAGGATGAGCATAGAAGCTCCAGGAGCAGCAGGGATGGGAAGAGAGATGATGAGGACAAGCATGGAAGGGAGCGGGACAGAGAACGTGACCGGGAAAGGGACATTGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCATAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGCCGTGACAGGGAGCATAGAGACAGAGAAAGGAGCCGGGATAAGGATTACAGAGACAGGGAAAGGGAAAGGGCAAGGGAACCCAGGGAACGGGATAGAGAAAGCAGAAGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGACCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGACGTGTATGAGTTCTTCTCGAGGGCGGGCAAGGTGCGAGATGTTCGGTTGATTATGGACCGCAATACAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTAACTGGTCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCTGGGGGAGCAAGAAGGCTATATGTCGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGCACAGTGTTTGAAGCATTTGGTCAGGTTGAACTTGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTCGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTAGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAGGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGGCTGGTTCAGCTGGTAGTGCTACTCTCAACGGCACTGGCCTTAACATGCCCGCAACAGTGGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGTCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCGTACTGTTAAAGAATATGTTTGATCCCAATGATGAGAAGGAGCCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAAAGCTCTAAATTTGGGAAGTTAAAGCACATCTTTGTTGATAAGGATAGCTCTGGTTTTGTATACTTACGGTTCGAAAATACTCAATCCGCAACAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1788 0.4653 MADFDEYEYLEKAVENSELKKEKEATNGRNGAAKSEERGYSRSSKHKDDHDGGGGDDDDNDVDRHSKRSKSGDGSRGGDYDKHKERGSLHRHSRSRDGNREKDEHRSSRSSRDGKRDDEDKHGRERDRERDRERDIEKESSRRSRSQSERHKSDPDDRERERSRDREHRDRERSRDKDYRDRERERAREPRERDRESRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGVGYIEFYDVMSVPMAIALTGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLNRSGTAPSMAGSAGSATLNGTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECVLLKNMFDPNDEKEPDFDLDIKEDVEAESSKFGKLKHIFVDKDSSGFVYLRFENTQSATSAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243786g00002 595 SMART rrm1_1 502 580 IPR000504 GO:0003723
Stsc243786g00002 595 SMART rrm1_1 324 396 IPR000504 GO:0003723
Stsc243786g00002 595 SMART rrm1_1 220 292 IPR000504 GO:0003723
Stsc243786g00002 595 CDD RRM3_RBM39_like 500 582 - -
Stsc243786g00002 595 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 414 519 IPR029123 -
Stsc243786g00002 595 FunFam Splicing factor CC1-like 147 304 - -
Stsc243786g00002 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 584 IPR000504 GO:0003723
Stsc243786g00002 595 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 3 594 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00002 595 Gene3D - 149 304 IPR012677 -
Stsc243786g00002 595 Gene3D - 317 423 IPR012677 -
Stsc243786g00002 595 SUPERFAMILY RNA-binding domain, RBD 323 587 IPR035979 GO:0003676
Stsc243786g00002 595 NCBIfam splicing factor, CC1-like family 105 593 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00002 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Stsc243786g00002 595 SUPERFAMILY RNA-binding domain, RBD 214 301 IPR035979 GO:0003676
Stsc243786g00002 595 SMART rrm2_1 324 396 IPR003954 GO:0003676
Stsc243786g00002 595 SMART rrm2_1 502 580 IPR003954 GO:0003676
Stsc243786g00002 595 CDD RRM1_RBM39_like 220 292 - -
Stsc243786g00002 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Stsc243786g00002 595 FunFam Splicing factor, CC1-like protein 496 595 - -
Stsc243786g00002 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 288 IPR000504 GO:0003723
Stsc243786g00002 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 394 IPR000504 GO:0003723
Stsc243786g00002 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 525 577 IPR000504 GO:0003723
Stsc243786g00002 595 Gene3D - 496 595 IPR012677 -
Stsc243786g00002 595 FunFam CC1-like, splicing factor 318 426 - -
Stsc243786g00002 595 MobiDBLite consensus disorder prediction 14 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243786g00002 Stsc-Chr243786 1229 8272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243786g00002 220 386 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 3.83e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243786g00002 K13091 - gmx:100789839 691.034