Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243774g00001 ATGGGCCTCTCGAGTCTTCCATCACCATCCGAAGGAGTGCTATGTGCAATTCTTGTTAACACTGTGCTCTCAGTTTCCATATTCAAAGGCATTGTTAGGACAATCCTTCACATTGTTGGCATCCACCTCTCATCATCCCCTTCGCCAAATGCCACCTCCCCGAGCCATCAACAGTCCGAGTCATTCGAGTTCCTCCTTGGCCGCCATCAACCATCAGACTCATTCGAGTTCCTCCTTAGCCCCTCGGAGACATATATCGAAGAGTTTAGGAGCCGGACGCCTACAATCCGGTTTGACAGTGTGTTCTCCTGCGAAAAACCTGAACATGACTGCTGTGTGTGCCTCTCCGAATTTGAGCCAGAATCCGAGATAAACCGCCTGCCCTGCGGCCATCTCTTCCACAAAGTGTGTTTGGAGAAGTGGTTGGACTATTGGAACATCACATGCCCTCTTTGCAGGAACCCTTTGATGCCTGAAGACAATGATCAATGGCTTTTAGTAAGCAATGAATGA 513 0.4912 MGLSSLPSPSEGVLCAILVNTVLSVSIFKGIVRTILHIVGIHLSSSPSPNATSPSHQQSESFEFLLGRHQPSDSFEFLLSPSETYIEEFRSRTPTIRFDSVFSCEKPEHDCCVCLSEFEPESEINRLPCGHLFHKVCLEKWLDYWNITCPLCRNPLMPEDNDQWLLVSNE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243774g00001 170 PANTHER - 1 160 IPR044249 -
Stsc243774g00001 170 Pfam Ring finger domain 110 153 IPR001841 -
Stsc243774g00001 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 158 IPR013083 -
Stsc243774g00001 170 SMART ringv_2 110 153 IPR011016 GO:0008270
Stsc243774g00001 170 SMART ring_2 111 152 IPR001841 -
Stsc243774g00001 170 SUPERFAMILY RING/U-box 104 159 - -
Stsc243774g00001 170 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243774g00001 Stsc-Chr243774 2519 3031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243774g00001 1 162 C3H Transcription Factor Family AT2G04240 57.576 3.84e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243774g00001 K16285 - gmx:100786803 246.514