Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243749g00001 ATGGTCAGAGACGATCTATACATAACGGTTCCGACCTTCTTCCGCTGCCCTATATCACTCGACGTCATGAAGTCCCCCGTCAGCCTCTGCACCGGCGTCACCTATGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAATACCTGCCCCGCCACCATGCAGGTCCTACACACCAAGGAATTCGTCCCCAACCGCAACTTGCAGAGGCTCATCCAGATCTGGTCTGAATCCCTCCGCCACTCTCCCGACTCACCGGATCGTACTGATTTGGTCCTTTCCAAGGACCAGGTCCTAGCCGCCTTCGCCCACTTGCAATCCCGTCCCGACGATCGCCTCCACTCGCTCGCCAAAATCGCGAGTTTTGCGCGAGATTCCGAGGATAACCGCAAGTTTCTTGCGAGAATAGAAGCATTCGTGCCTGCGCTGCTCGGTTTCCTCCTCAATGTCCACGACGATTTTGAGTTCCTTGAGCAGGTTATTATGATGTTGAATCTGGTTCTGGATAAAATCGAAGACCGCGAGGCCTTGAAAAAATCGATGCTCAAGAACCAGGGCAGCAATAGCAGCTTGGATTCTCTGCTCCTCATTCTGCAACGAGGAAGCACCGATTCGAAAATCGCGTCCGCTAGGGTCTTACAATCACTCGCCATGGATACGGAATCAAAGCTCTTGATTGGGGAAAAGGAAGGCCTAATTTCCTTAGTGCTCAGGCTAATCGCGCCGGACAAAGATCCGACGGTGATAGAGAACGCCTTGTCATGCCTGGTAGCAATCTCGACGGCGAAAAAGAACAAGTTGAGGCTGGTGCATCTCGGAGCAGTGAAAGCGTTCTCGAAGCTTCTAACGGAGTCGAGCCTGAGTGCGTCGGCGGCGGAGAAGGTGCTGAAGCTTCTGGAAACAGTGTCGTCTACGAAAGAAGGGAGGGTGGAGATATGTGACGACAGCACGTGCGTGGCGGCGATACTGAGCAAGGTGCTGAAGGTTTCGAGCACGGCGACGGAACACGCCGTAACGACTCTGTGGAGCGTGTGCTATCTGTTTCGTGACCAGAAGGCGCAAGAAGCGGTTACGAAGGCTAACGGCTTAACGAAGATTCTGTTACTTATGCAGAGCAATTGTTCGCCTCCTGTGCGCCAAATGTCCGCAGATTTGCTTAAGATTTTTAGAGTAAATTCCAAATCGTGTCTTTCTTGTTATGACACCAAAACCACCCATATCATGCCCTTCTGA 1236 0.5267 MVRDDLYITVPTFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNRNLQRLIQIWSESLRHSPDSPDRTDLVLSKDQVLAAFAHLQSRPDDRLHSLAKIASFARDSEDNRKFLARIEAFVPALLGFLLNVHDDFEFLEQVIMMLNLVLDKIEDREALKKSMLKNQGSNSSLDSLLLILQRGSTDSKIASARVLQSLAMDTESKLLIGEKEGLISLVLRLIAPDKDPTVIENALSCLVAISTAKKNKLRLVHLGAVKAFSKLLTESSLSASAAEKVLKLLETVSSTKEGRVEICDDSTCVAAILSKVLKVSSTATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPPVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243749g00001 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Stsc243749g00001 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Stsc243749g00001 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Stsc243749g00001 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 83 IPR013083 -
Stsc243749g00001 411 SUPERFAMILY ARM repeat 108 393 IPR016024 -
Stsc243749g00001 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
Stsc243749g00001 411 Gene3D - 84 407 IPR011989 -
Stsc243749g00001 411 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Stsc243749g00001 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Stsc243749g00001 411 SUPERFAMILY RING/U-box 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243749g00001 Stsc-Chr243749 2701 4585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243749g00001 1 411 U-box Gene Family AT5G64660 51.049 1.36e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243749g00001 - - gmx:100799627 575.859