Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243653g00003 ATGATGAATACTACTCCAGCTAAGCAATTCTCATTCTTCAAAGTCTTCCTTCCACAGTTCAGCTCTGAAAGATTGCTACTACCAGAAAAGTATGTGGCATTGACAAGAATGAAAGAAAGGGTACCTAAGGAATTCACACTGAGAGATGGGAGAGGAGGAGAATGGAGGGTGAAGACAAGTTGCATTGATGAGAAGGTGTATTTTGATGATGGATGGAAAAAGTTTGCAAGTGATAATGCTCTACAAGCTGCTGTTTTCTTTCTTGTTTTCTATCCAGAAAATAGCAACACATTCATGTTCAAGATCTTTGAAGAATCATCAATGTGTGAAAAGACACAAATCGAGGAGGAAGAGGAAGAGGAGGAGGCAGCAGCAAAAGAAGAAGATGATGATGATAAGGAGGAGAATGAAGAGATGTATCATCATAGAGCTGGGAAAGCTTCTGTTAAAAGCAAAAGGGGAAATGATGCTGGAAGTTGTGTCACAAAAAAGGGTGACAAAATTGACATTAAGGAGTATGAAGACATCATTGCAATGTATGTCGATCGACAACACAATCCATACTTTGTTACCAAAAACAGCAGAACCAGATCCAATGAACTGCAAGTTCCAAGTCAGCTCATTAAGGACTACTCCATTATCTTCCCAGAAACTATCAAACTATGTTGCAAGTATATCAAAGTGATCTCGCCGGGGAAGACAACCATTGAGAGAAGTCCTTGGCCTCATGTTATTGGAATAAGGAATGAATGGCGAGATGGTAGAATTTGCATCAAGGAGTGGGGAAGGTTTTGCAGAACTAACGATGTAAATACAAATGATGCAACTTTCATATGTGAATTGAAGATGGAAGAGGACAGAAAAAAAGTAAAAAGCATACATGTCTATGTTGTTAAGAAACAAGCTTAG 909 0.3883 MMNTTPAKQFSFFKVFLPQFSSERLLLPEKYVALTRMKERVPKEFTLRDGRGGEWRVKTSCIDEKVYFDDGWKKFASDNALQAAVFFLVFYPENSNTFMFKIFEESSMCEKTQIEEEEEEEEAAAKEEDDDDKEENEEMYHHRAGKASVKSKRGNDAGSCVTKKGDKIDIKEYEDIIAMYVDRQHNPYFVTKNSRTRSNELQVPSQLIKDYSIIFPETIKLCCKYIKVISPGKTTIERSPWPHVIGIRNEWRDGRICIKEWGRFCRTNDVNTNDATFICELKMEEDRKKVKSIHVYVVKKQA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243653g00003 302 SMART B3_2 12 106 IPR003340 GO:0003677
Stsc243653g00003 302 ProSiteProfiles B3 DNA-binding domain profile. 10 106 IPR003340 GO:0003677
Stsc243653g00003 302 PANTHER B3 DOMAIN-CONTAINING 7 282 - -
Stsc243653g00003 302 MobiDBLite consensus disorder prediction 111 135 - -
Stsc243653g00003 302 Coils Coil 109 137 - -
Stsc243653g00003 302 Pfam B3 DNA binding domain 12 105 IPR003340 GO:0003677
Stsc243653g00003 302 SUPERFAMILY DNA-binding pseudobarrel domain 8 104 IPR015300 -
Stsc243653g00003 302 MobiDBLite consensus disorder prediction 111 161 - -
Stsc243653g00003 302 Gene3D - 4 109 IPR015300 -
Stsc243653g00003 302 CDD B3_DNA 10 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243653g00003 Stsc-Chr243653 6530 7918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243653g00003 12 302 REM Transcription Factor Family AT3G53310 27.609 1.71e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc243653g00003 B3 1.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243653g00003 - - ahf:112736814 351.288