Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243623g00002 ATGGATTACTATTATGTGAACCCAATAAGCCCCAATTATTACGGTGCTCATGATGATGACTCTGCCATGAATAGCATGTCTTTCATGATATCTGATTTTCTTATGGCTGATGATGATGATCATAGTAACCAAGATCAGTGTGGATCACAATCACAAAGTACTACTGATGAATCATCAGAGATGGCAGCGTTCAGCGATGTCACTACTACTCAAGCTCACAGATTCAATAATAATAACAATAATGGTGAAGCCTCCAGGAAATGCAAGAATAACGGGAGTAAGAGAAGTAAGGGAGAAGTGAATTCAAGAGTGGCGTTTAGAACGAAATCGGAAATTGATGTTATGGATGATGGATACAAATGGAGGAAGTACGGGAAAAAATCAGTCAAGAACACTCCATATCTAAGGAACTATTACAAGTGTTCAAGTGAAGGATGCAGTGTGAAGAAGAGGGTGGAAAGGGACAGAGATGACTCAAGCTATGTCATAACAACCTATGAAGGCATACACAATCATGCAAGCCCATTTGCCTACTAA 537 0.3948 MDYYYVNPISPNYYGAHDDDSAMNSMSFMISDFLMADDDDHSNQDQCGSQSQSTTDESSEMAAFSDVTTTQAHRFNNNNNNGEASRKCKNNGSKRSKGEVNSRVAFRTKSEIDVMDDGYKWRKYGKKSVKNTPYLRNYYKCSSEGCSVKKRVERDRDDSSYVITTYEGIHNHASPFAY 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243623g00002 178 MobiDBLite consensus disorder prediction 45 87 - -
Stsc243623g00002 178 MobiDBLite consensus disorder prediction 39 102 - -
Stsc243623g00002 178 SUPERFAMILY WRKY DNA-binding domain 107 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc243623g00002 178 ProSiteProfiles WRKY domain profile. 110 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243623g00002 178 Pfam WRKY DNA -binding domain 116 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243623g00002 178 FunFam WRKY transcription factor 57 101 175 - -
Stsc243623g00002 178 Gene3D WRKY domain 98 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc243623g00002 178 SMART WRKY_cls 115 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243623g00002 178 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 176 IPR044810 GO:0003700
Stsc243623g00002 178 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243623g00002 Stsc-Chr243623 3167 4413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243623g00002 84 174 WRKY Transcription Factor Family AT5G64810 70.968 8.38e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc243623g00002 WRKY 1.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243623g00002 - - gmx:732583 187.963