Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243612g00001 GAAGTACCGGAAACAAAGCAAGAGACTACTAGGCCTCCTGGGGTTTGGCAATGCACCATTTGCACGTATGACAATGATGAGAGTATGACATCTTGTGATATTTGTGGTGTTATACGCCGTGACTTTGTTACCACTGTTGAAGACAAAAGCAAAACATCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTGCTTCATTACCAAAACAGAATCCAAAAGAGGTTGTATTATTTCCCAAGCAGGATGATGGTTTTCAGACATATGCCAGTAACTTCTGCAAGCATGGGAATGTCCAAGGAGAATTTCATGAATCTCATAAGGCTTTTAATACTAAAAGCCATTCCCATTTAAACATAGCTCCTTTCAAGTTTGATGTTCCATCCCCGGACGATGTTGTTTATACTGGTCTACATTCCTCAAAAACAGGTTCAAAAGACAAAGACATGAATTCTAAAACTTCTCGGGTTTCGTCAAGCATCACAGTGAATGAACACACTGTTCAATCAAATGTTGAAAGTTTAGAGAATTTAACATCACTAATGCAAAAGGGTAGGCAGGATAGGTCGGCTGAGAGCAAGCTTTCAAAGAAGCCAGCAGTTCATGTGGAAACTAGTGAAAAAACTTCAAATGCGAATAACAAAAATGGTACACTTGATATTCGCTCGACCAAAGGAAAGACTGGTAGTTCATCTGCAATGCTCGAAGTCAAAGGTAGTGATGAAATTAATTTCTCTTCTATCAGAGATGGACAATCTGAAAGTCTTTCCAGCAGTTTCAACAAAGTAGCTGTGGATGCAAGATCTGGGAATTCGGATAATACTAATGCTAAGGGATCTCACCCACAAGTTTCTTACAAACCGGAAAAATGGATGCTACCTCAACAAGCTGAAGATACGTTGACTCAGCTAAATCTTGCAATTGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGGGAAAGAGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACTAAGAAATATCATGTTGTGGTTCTCGACTCCCCCGGGCATAAAGATTTTGTGCCAAACATGATTTCTGGAGCAACACAGGCCGATGCTGCAATTCTTGTCATAGATGGTTCATGTGGTTCATTTGAAGCTGGTATGGACAGTGGCAAGGGACAAACTAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGACCAGGTTATAGTTGCAGTAAATAAGATGGATACGGTAGCATATGCCAAAGATAGATTTGATTATATAAGACAACAGTTGGGAATGTTTCTGCGCACTTGTGGTTTCAAAGATTCTTCTGTGTCATGGATTCCCATGAGTGCAATGGAAAATCAAAATTTAGTGGCACCCCCTTCTGAAGCTAGTTTAAAGAACTGGTATGACGGACCATATTTGTTAGATGCAATTGACTCACTCCCACCGCCTACTAGAGAATACTCGAAACCTCTGATAATGCCAATATGTGATGTCATCAAATTACCTACGCTTGGACAGGTTTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTGCAGCTGTCATGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTCCAGTGTTGCAAGGGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTTGATGGAAGTAATGTGATTGCAGGAGGTGTGTTATGCCATCCTGACTTTCCTGTTGCTGTTGCAAATCATTTGGAGTTGAAAGTGCTTGTTTTGGATGGTGCAAGCCCCATATTGATGGGCTCTCAGTTGGAGTTTCATATACACCATGCAAAGGAGCCTGCAAGGGTTTCAAGAATATCATCAGTACTTGATCCGAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGCTGTCTCACTGCAAAGCAAAGTGCTGTAATTGAGGTAACTTTGCAGAAGCCAGTTTGTGTAGTTGATGTCTCAATTTGTAAAGCTCTTGGAAGGGTATCCCTAAGATCATCAGGAAGAACAATAGCTGTTGGACTTGTGACGAGAATAATTGAAGAGCAACACTAG 2082 0.4179 EVPETKQETTRPPGVWQCTICTYDNDESMTSCDICGVIRRDFVTTVEDKSKTSGASKLARSLFASLPKQNPKEVVLFPKQDDGFQTYASNFCKHGNVQGEFHESHKAFNTKSHSHLNIAPFKFDVPSPDDVVYTGLHSSKTGSKDKDMNSKTSRVSSSITVNEHTVQSNVESLENLTSLMQKGRQDRSAESKLSKKPAVHVETSEKTSNANNKNGTLDIRSTKGKTGSSSAMLEVKGSDEINFSSIRDGQSESLSSSFNKVAVDARSGNSDNTNAKGSHPQVSYKPEKWMLPQQAEDTLTQLNLAIGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDGSCGSFEAGMDSGKGQTREHAQLIRSFGVDQVIVAVNKMDTVAYAKDRFDYIRQQLGMFLRTCGFKDSSVSWIPMSAMENQNLVAPPSEASLKNWYDGPYLLDAIDSLPPPTREYSKPLIMPICDVIKLPTLGQVSACGKLEAGALRSGSKVLVMPAAVMGTVRSLERDSNASSVARAGDNVAVTLQGVDGSNVIAGGVLCHPDFPVAVANHLELKVLVLDGASPILMGSQLEFHIHHAKEPARVSRISSVLDPKTGKVTKKSPRCLTAKQSAVIEVTLQKPVCVVDVSICKALGRVSLRSSGRTIAVGLVTRIIEEQH 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243612g00001 693 Gene3D Translation factors 583 693 - -
Stsc243612g00001 693 SMART zf_4 14 38 IPR001876 -
Stsc243612g00001 693 FunFam Translation elongation factor EF-1 489 579 - -
Stsc243612g00001 693 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 297 493 IPR000795 GO:0003924|GO:0005525
Stsc243612g00001 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 507 IPR027417 -
Stsc243612g00001 693 Gene3D - 290 484 IPR027417 -
Stsc243612g00001 693 MobiDBLite consensus disorder prediction 203 230 - -
Stsc243612g00001 693 Gene3D Translation factors 490 579 - -
Stsc243612g00001 693 SUPERFAMILY Translation proteins 484 579 IPR009000 -
Stsc243612g00001 693 Gene3D - 8 52 - -
Stsc243612g00001 693 CDD HBS1_C_III 580 688 - -
Stsc243612g00001 693 ProSitePatterns Zinc finger RanBP2-type signature. 16 35 IPR001876 -
Stsc243612g00001 693 PANTHER TRANSLATION FACTOR 305 688 - -
Stsc243612g00001 693 MobiDBLite consensus disorder prediction 137 158 - -
Stsc243612g00001 693 PRINTS GTP-binding elongation factor signature 361 372 IPR000795 GO:0003924|GO:0005525
Stsc243612g00001 693 PRINTS GTP-binding elongation factor signature 406 415 IPR000795 GO:0003924|GO:0005525
Stsc243612g00001 693 PRINTS GTP-binding elongation factor signature 345 355 IPR000795 GO:0003924|GO:0005525
Stsc243612g00001 693 PRINTS GTP-binding elongation factor signature 325 333 IPR000795 GO:0003924|GO:0005525
Stsc243612g00001 693 MobiDBLite consensus disorder prediction 185 202 - -
Stsc243612g00001 693 MobiDBLite consensus disorder prediction 181 230 - -
Stsc243612g00001 693 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 585 689 IPR009001 -
Stsc243612g00001 693 FunFam Translation elongation factor Tu 289 486 - -
Stsc243612g00001 693 FunFam elongation factor 1-alpha isoform X4 583 692 - -
Stsc243612g00001 693 Pfam Elongation factor Tu C-terminal domain 583 688 IPR004160 -
Stsc243612g00001 693 SUPERFAMILY Ran binding protein zinc finger-like 12 39 IPR036443 -
Stsc243612g00001 693 Pfam Elongation factor Tu GTP binding domain 314 481 IPR000795 GO:0003924|GO:0005525
Stsc243612g00001 693 ProSiteProfiles Zinc finger RanBP2 type profile. 12 41 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243612g00001 Stsc-Chr243612 1782 6474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243612g00001 117 691 Eukaryotic Initiation Factors Gene Family AT5G10630 55.863 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243612g00001 K14416 - gmx:100801724 1046.57