Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243529g00004 TCCGCCCGGTCGATGAAGCGGCCGCGCCTCGTGTGGACGCCTCAGCTGCACAAGCGCTTCGTCGACGTGGTGGCGCACCTCGGAATCAAGAACGCAGTGCCGAAGACGATTATGCAGCTGATGAACGTAGAAGGATTGACTCGCGAGAACGTTGCGAGCCATCTTCAGAAATATCGCCTCTACTTGAAGCGAATGCAAGGTTTGTCGAACGAAGGTCCTTCTTCTTCTGACCAGTTATTCGCGTCCACGCCTGTGCCGCAGAGCTTGCACGAGTCTGGCGGTGGAGTCGTCGGCGGCGGTGGCGGTGGAAGCGCAGGGCATTCTCATGGAAACGGACACCTTCCAGTTCCAATTCCGTTGCCGTATCCACCTCCGCCGGCGATGATGCCAATGCCGATGATCGGAATGCCTCCGATGGGGATGGCCGTAGGGAACCACCACGGTTTCAACCCGCAACGGGATTGGTCCGGTGCGAATAAGTTTGGTTCTGTTGTTTCGTACCCTCACAGTCACGGCGTGACTCCTAGTGATAAATGA 537 0.5736 SARSMKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESGGGVVGGGGGGSAGHSHGNGHLPVPIPLPYPPPPAMMPMPMIGMPPMGMAVGNHHGFNPQRDWSGANKFGSVVSYPHSHGVTPSDK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243529g00004 178 NCBIfam myb-like DNA-binding domain, SHAQKYF class 8 60 IPR006447 GO:0003677
Stsc243529g00004 178 MobiDBLite consensus disorder prediction 69 89 - -
Stsc243529g00004 178 FunFam Two-component response regulator 3 66 - -
Stsc243529g00004 178 Gene3D - 4 66 - -
Stsc243529g00004 178 Pfam Myb-like DNA-binding domain 11 59 IPR001005 -
Stsc243529g00004 178 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 151 IPR044841 GO:0003700|GO:0006355
Stsc243529g00004 178 SUPERFAMILY Homeodomain-like 5 64 IPR009057 -
Stsc243529g00004 178 MobiDBLite consensus disorder prediction 69 112 - -
Stsc243529g00004 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243529g00004 Stsc-Chr243529 10462 11155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243529g00004 1 91 G2-like Transcription Factor Family AT3G46640 86.957 6.98e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc243529g00004 Myb_DNA-binding 4.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243529g00004 - - csav:115718944 214.157