Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243529g00003 ATGAGACACCATCGTTTTTGGGATAAGTTTATTAACATGCATGGATGTCCATTAACAACTACTTCTCTTCCTCTTCCTCTCACTTTACCCCACAACTTCCTTTCTCACACCCACACAAATCTATGCTTGAGATCCCTTCTTTCCCTCCAAGCCCAAAACCCCTCACTTTCTTTGATACCCATTTGCAAATATACATATGCGAGTGCTCTCAGCTATGGGAATCATGGGATTTGGAACACACGAGGAAGACGTGGCAAAAGAGCAGTGGCTGTCAGAGCAAGCCGCGGTGAGTCTCCGTACGAGGTTCTTGGGGTGTCCCCATCCGCAACTTCCGACGAAATCAAAAGAGCCTATAGGAAACTTGCCCTCAAGTATCACCCCGATGTTAATAAAGAGGATAATGCTCAGGAGAAGTTTATGAGGATCAAGCATGCTTACAATACCCTGATCAATTCTAGTTCCCGCAGAAAGTATGATTCTGGAAATCGTGGTTCTGATTATTCATATTACTCTTCTCAAAGAAGCCAAAGTAGGAATACACAAGAAGAAGAATTTTATGGATTAGAGGACTTCTTTAAAGATCTTCAAGAAGAATTCAAGAACTGGGAAGCCAATGCTGCTTCACAGGGAAAGCCAAAGAGCCTATGGGAGGAATTGGCGGAAATAGGAGAAGAGTTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATACAGAAGATGATCAAAATAACAATAATAAAACAACAACTCAAGGTAGAAATCAATCTAACATGTCTGGGACAGGCACACCCGATAATGAAGCTGGCAAAGGAAAATCAAGCATTGAGGATAACCTTGATGATATAGAAGCCACTCTGGCTCAGTTAAAGAAGGAATTAGGCTTATAG 891 0.4164 MRHHRFWDKFINMHGCPLTTTSLPLPLTLPHNFLSHTHTNLCLRSLLSLQAQNPSLSLIPICKYTYASALSYGNHGIWNTRGRRGKRAVAVRASRGESPYEVLGVSPSATSDEIKRAYRKLALKYHPDVNKEDNAQEKFMRIKHAYNTLINSSSRRKYDSGNRGSDYSYYSSQRSQSRNTQEEEFYGLEDFFKDLQEEFKNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNIVDTEDDQNNNNKTTTQGRNQSNMSGTGTPDNEAGKGKSSIEDNLDDIEATLAQLKKELGL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243529g00003 296 ProSiteProfiles dnaJ domain profile. 98 162 IPR001623 -
Stsc243529g00003 296 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 58 255 - -
Stsc243529g00003 296 CDD DnaJ 99 151 IPR001623 -
Stsc243529g00003 296 MobiDBLite consensus disorder prediction 237 280 - -
Stsc243529g00003 296 PRINTS DnaJ domain signature 118 133 IPR001623 -
Stsc243529g00003 296 PRINTS DnaJ domain signature 100 118 IPR001623 -
Stsc243529g00003 296 PRINTS DnaJ domain signature 134 154 IPR001623 -
Stsc243529g00003 296 Coils Coil 273 296 - -
Stsc243529g00003 296 SUPERFAMILY Chaperone J-domain 92 158 IPR036869 -
Stsc243529g00003 296 SMART dnaj_3 97 154 IPR001623 -
Stsc243529g00003 296 Gene3D DnaJ domain 96 208 IPR036869 -
Stsc243529g00003 296 MobiDBLite consensus disorder prediction 153 182 - -
Stsc243529g00003 296 MobiDBLite consensus disorder prediction 240 269 - -
Stsc243529g00003 296 FunFam Chaperone DnaJ-domain superfamily protein 95 208 - -
Stsc243529g00003 296 ProSitePatterns Nt-dnaJ domain signature. 139 158 IPR018253 -
Stsc243529g00003 296 Pfam DnaJ domain 99 159 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243529g00003 Stsc-Chr243529 6159 8214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243529g00003 100 160 C2H2 Transcription Factor Family AT1G74250 41.791 9.03e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243529g00003 - - adu:107461539 451.055