Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243520g00001 ATGGGAATGGAGGAAGTTGAGGATGCTTCAAGAACACTTCTGCAGGACAGGTGTAACAATGCGGATAAAGAGCAACAGAGGATAATGGATGAGTTGGAACTGGCTGTGAATGGAACACATAATATCGTTTGTGATGGTGGTGTAATCTCTACGGGTGCAGTGTCAGGTGAGGAAAAGAATGACAGCAGGGTAGCTGAGTTGATGGATTACCGATTGAAGAATGATGAATTCCTGCATTCTGATGTCAAAAAATGTGGTAATGCAGGTGAGATGCAAGTTCAAGGCTCGCGTGATCGAATTCTCTCGATATCAACACAAGAACAAACCTCTGCATTGGTAACTAGTACATCTAATATAAACCACGAGAATGAAATGAAAATGGTATGTGCTGCAATGGATTCTCTCCCAAATTCAAAAGGTGAAGTTGGTAGGGTAGAGCAATGCTACTCAACGCTTACTCAAGCATTGCATGTTTCTTCAGATAATATTACTAGTGAAACATTGAACATATGTGAAGATGAAAGTCCGCCGGATTATGATAATTTGGAAGATAAATGTGAAACGAAAAATGAAATGAATTTAGAAAAGTCGACTTGTGCAAACAATCTATCTATGTCGTCTAATATTCTGATTGAAAATGAAGATCTAGAAGAGGGAGAACTTGTTGGAGACATTGGAGTGGATCGATTTGAATCCAATACCATTGACTATGAGATTAAAGATCTTAAGGCTGATGTCAGCTGTAAGAAAAAGCGTGGCCCTGTTTCTGCGGAAAAGAAAGCGAAAAAGAAGATAAAGAAGAGGAAAAAACGGGCAGAAAAGAACAAGGAACATGGTCTCAAAAGGTTGAAGTTGCCTCTAGTACAACAGAAACCAAAAACTATCAATTATTGTCGCCATTTTCTTGTGGGAAGATGCTATGAGGGTGACAAGTGCCAGTTTTCACATGATACAGTGCCTTCTACCAAATCATCGCCATGCTCCTTTTTTGCTCGTCACTCCTGCATGAAAGGAGATGACTGTCCTTTTGATCATCAACTTTCCAAGTATCCTTGTGATAACTTTGTGTCCAGAGGCTTTTGTGCCAGAGGTGATGCGTGTTTGTTTTCACACAAGTTACCAGCCAAGGAAGACATTCCTACACCTTCAAAGGTTTGCAAACCAGGAATGAAATCACACTTTTCAGGAAACACAAATTTCAACATGCCACCTAACATTCATGGCTGTAGTTCTATCCAACAGAACCATTTAATCAATTCTCCAAGAGTTCTCTCTCACATCAATTTGGAACATAAAGTGACAAACACTGTACAGAAACGGCCTAAGCTTGCATCTAAAGGAGTTAGCTTCATCGATGTTGCAAAGCTTTCATCGCCTACTCCTACTACACCAAAAGAAGGCACTACCAAAGTTGGCTCATCCTCTGCTGACCAAAGTACATCTGGAACAAATCAAACCTCGGTGGAGATTCCAAAGAAATTGCCGGCTAGGGTTCCAAAGGGAATTAACTTTCTTGCTTTTGGCAAAGATCCTGTGAACAGTTTTAAGAGTTCTTTCAAGTCCCTTGTAAATGCGGAAAATGGTACCTCTCATGTGGATGACAATGAAAGGAAACTGCTACAAGAGGCAAAAGGGGCAACTGATCTTTTTCAAACTTCCGCAGCGGCGCCATTTATGCGTCTGGTTTCTCCTTTATCATCAGAACAGCTACCATCTGGAAAGGAGCTCTTGTCGACTTTATTATCATTTGCAGCGGAGCATGAATTAGTTATCAAGAAGAAAGATTCTGCTGAACCTAGCCGTCGCCGTCGTGGGGGTTGTCGTCGTCTTCGGCCCGTCGATTTCAACGCCGTGGTGGTGGTTCTCGCCAGTAGTCGGCCGTCACTCCCGTCCAACGCCCTCGCGACGGTTACCGTCCCTCCCTTCGCCGTCCAACGCCGTGATTCTCACCAGAGTTTCCAGAGGTATCCATTGGCATTGGGAAAAGCATGGTTAGTGCTTGCAATGTTGTAA 2013 0.4267 MGMEEVEDASRTLLQDRCNNADKEQQRIMDELELAVNGTHNIVCDGGVISTGAVSGEEKNDSRVAELMDYRLKNDEFLHSDVKKCGNAGEMQVQGSRDRILSISTQEQTSALVTSTSNINHENEMKMVCAAMDSLPNSKGEVGRVEQCYSTLTQALHVSSDNITSETLNICEDESPPDYDNLEDKCETKNEMNLEKSTCANNLSMSSNILIENEDLEEGELVGDIGVDRFESNTIDYEIKDLKADVSCKKKRGPVSAEKKAKKKIKKRKKRAEKNKEHGLKRLKLPLVQQKPKTINYCRHFLVGRCYEGDKCQFSHDTVPSTKSSPCSFFARHSCMKGDDCPFDHQLSKYPCDNFVSRGFCARGDACLFSHKLPAKEDIPTPSKVCKPGMKSHFSGNTNFNMPPNIHGCSSIQQNHLINSPRVLSHINLEHKVTNTVQKRPKLASKGVSFIDVAKLSSPTPTTPKEGTTKVGSSSADQSTSGTNQTSVEIPKKLPARVPKGINFLAFGKDPVNSFKSSFKSLVNAENGTSHVDDNERKLLQEAKGATDLFQTSAAAPFMRLVSPLSSEQLPSGKELLSTLLSFAAEHELVIKKKDSAEPSRRRRGGCRRLRPVDFNAVVVVLASSRPSLPSNALATVTVPPFAVQRRDSHQSFQRYPLALGKAWLVLAML 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243520g00001 670 ProSiteProfiles Zinc finger C3H1-type profile. 321 348 IPR000571 GO:0046872
Stsc243520g00001 670 ProSiteProfiles Zinc finger C3H1-type profile. 292 319 IPR000571 GO:0046872
Stsc243520g00001 670 MobiDBLite consensus disorder prediction 253 276 - -
Stsc243520g00001 670 Gene3D - 287 350 - -
Stsc243520g00001 670 Coils Coil 255 275 - -
Stsc243520g00001 670 MobiDBLite consensus disorder prediction 255 276 - -
Stsc243520g00001 670 SMART c3hfinal6 293 318 IPR000571 GO:0046872
Stsc243520g00001 670 SMART c3hfinal6 321 347 IPR000571 GO:0046872
Stsc243520g00001 670 SMART c3hfinal6 349 373 IPR000571 GO:0046872
Stsc243520g00001 670 MobiDBLite consensus disorder prediction 455 489 - -
Stsc243520g00001 670 Pfam CCCH-type zinc finger 298 317 IPR041367 -
Stsc243520g00001 670 ProSiteProfiles Zinc finger C3H1-type profile. 351 374 IPR000571 GO:0046872
Stsc243520g00001 670 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 248 543 IPR045124 GO:0003723|GO:0045892
Stsc243520g00001 670 SUPERFAMILY CCCH zinc finger 292 317 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243520g00001 Stsc-Chr243520 1972 8244 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc243520g00001 zf-CCCH_4 3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243520g00001 - - aip:107615152 594.349