Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243503g00002 ATGTCTGTCTCTGCGGCACTCTCCTCCACACCTTCCTATCACCTCACCTCTCTTCCTTCAACTTCTCCACTTTCTCTCAGATTTTCCCTTTCTTTCCGGGAAAATAACACTAGAGGCCGGTTGTTCTTGAGTCAGAAGCAGTCAAGAGTTGTGGTGGTGAGGTCTCAGGCCACAACCACACCTGCTTCTTCTGAGGCAGTTAAAGTGACAGCTGTGCCTTCTCAGATGAAGGCCTGGGTGTACGGTGAGTACGGCGGTGTTGACGTCTTGAAGTTTGATTCAAGTGTTGCTGTTCCTGATGTGAAGGAGGATCAGGTTCTTGTTAAGGTTCTTGCTGCTGCTCTCAACCCTGTTGATGGCAAGAGAAGGCAGGGAAAGTTCAAGGCCACTGATTCTCCTCTTCCGACTGTTCCGGGGTACGATGTTGCCGGCGTGGTGGTGAAGGTTGGTAGTGAAGTGAAGGATTTCAAGGTGGGTGATGAAGTATATGGTGATGTCAATGAGAAGGCACTTGAAGGGCCTAAGCAGTTTGGCTCTTTAGCTGAGTACACTGCTGTTGAAGAGAGATTGTTAGCACCAAAACCAAAGAACTTGGACTTTGCTGAGGCTGCTTCTCTTCCTCTTGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGCTTGGATTCTCAGCTGGTAAATCCATTCTTGTTCTTAATGGTTCTGGTGGGGTTGGAACCCTAGTCATTCAGCTAGCTAAGCAAGTTTTTGGGGCTTCAAGAGTTGCTGCCACTTCAAGCACCAGAAATTTGGAGCTCTTGAAAAGCTTGGGAGCTGATTTGGCTATTGACTACACAAAGGAGAATTTTGAAGACTTGCCAGAAAAATTTGATGTCGTTTATGATGCCATTGGGCAATGTGAGAAAGCAGTGAAGGCAGTGAAAGAAGGTGGGAGTGTGGTGGCACTAACAGGAGCAGTTACACCACCAGGCTTCAGATTTGTGGTTACTTCCAACGGAGCTGTTCTCAGGAAATTGAACCCTTACTTGGAGAGTGGACAAGTGAAGCCAGTTGTGGATCCCAAAGCTCCCTTCTCCTTTGCTCAGCTTGCTGAAGCCTTCTCTTACCTTGAAACAAACCGTGCCACTGGAAAGGTTGTTATAAGTCCCATCCCATAA 1155 0.4753 MSVSAALSSTPSYHLTSLPSTSPLSLRFSLSFRENNTRGRLFLSQKQSRVVVVRSQATTTPASSEAVKVTAVPSQMKAWVYGEYGGVDVLKFDSSVAVPDVKEDQVLVKVLAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFAEAASLPLAIETAYEGLERLGFSAGKSILVLNGSGGVGTLVIQLAKQVFGASRVAATSSTRNLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCEKAVKAVKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGQVKPVVDPKAPFSFAQLAEAFSYLETNRATGKVVISPIP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243503g00002 384 SMART PKS_ER_names_mod 85 380 IPR020843 GO:0016491
Stsc243503g00002 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 198 320 IPR036291 -
Stsc243503g00002 384 Gene3D - 83 380 - -
Stsc243503g00002 384 MobiDBLite consensus disorder prediction 1 20 - -
Stsc243503g00002 384 Pfam Alcohol dehydrogenase GroES-like domain 104 166 IPR013154 -
Stsc243503g00002 384 SUPERFAMILY GroES-like 73 230 IPR011032 -
Stsc243503g00002 384 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 225 246 IPR002364 GO:0008270|GO:0016491
Stsc243503g00002 384 Gene3D - 217 331 - -
Stsc243503g00002 384 CDD MDR_like_2 76 380 - -
Stsc243503g00002 384 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 67 384 IPR044626 GO:0016628
Stsc243503g00002 384 Pfam Zinc-binding dehydrogenase 269 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243503g00002 Stsc-Chr243503 1025 3236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243503g00002 100 272 Monolignol Biosynthesis Gene Families AT4G39330 27.136 4.61e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243503g00002 K18980 - gmx:100810816 579.326