Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243486g00002 ATGAGTTTTGTATTCCGGGGAACAAGAGCAGACATAGAAAATGGATTTCCTGGATTTATGCCTGAGCGACGTGCATTGCGTGTTCATCCAACACGTCCTAGTAATTCAAATTCACTCACTTTCCTCGTCACAGTTCTCTTGTTGTTCATGATACTTAACTCGCACCAAATGTCACCAAACTTTCTGCTCTGGCTGGTGCTCGGTGTTTTCTTAATGGCTACAATGTTGAGGATGTATGCTACGTGTCAACAGCTTCAAGCACAGGCCCAAGCGCATGCAGCAGCAGCTAGTGGGCTGTTAGGCCACACTGAGCTGCGGCTGCATATGCCACCATCAATAGCCCTTGCCACCAGAGGACGCCTACAAGGCCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGAACTAGATTATGAAACGCTGAGGGCTCTTGATTCTGATAATGTTCCTACTGCACCTTCCATGACCGAGGAAGAGATAAATGCACTTCCAGTACACAAATACAAGGTTTCTGGTCCACAGAACAGTGGCACTGGTTCCTCAATGCAACAGGGTTCATCTTCCACTCCTGCGGAGAAGAAGCAAGACGGTTCAAATGTATCTGGGAGCATGAAAGCCTCTGATGATGAGCTGACTTGCAGTGTATGTTTGGAGCAAGTTAACATTGGGGATGTGCTTCGTAGTTTGCCCTGCTTGCATCAGTTTCACGCGAATTGCATTGATCCCTGGCTGCGGCAACAAGGAACATGCCCTGTCTGCAAATTCAGAGCGGGATCTGGGTGGAATGAAAGTGGAGCTAATGATATTGCAGATATGGTTTGA 828 0.4734 MSFVFRGTRADIENGFPGFMPERRALRVHPTRPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDELDYETLRALDSDNVPTAPSMTEEEINALPVHKYKVSGPQNSGTGSSMQQGSSSTPAEKKQDGSNVSGSMKASDDELTCSVCLEQVNIGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNESGANDIADMV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243486g00002 275 PANTHER TARGET OF ERK KINASE MPK-1 1 261 - -
Stsc243486g00002 275 Pfam Ring finger domain 214 256 IPR001841 -
Stsc243486g00002 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 261 IPR013083 -
Stsc243486g00002 275 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Stsc243486g00002 275 SMART ring_2 215 255 IPR001841 -
Stsc243486g00002 275 SUPERFAMILY RING/U-box 210 259 - -
Stsc243486g00002 275 CDD RING-H2_PA-TM-RING 214 256 - -
Stsc243486g00002 275 MobiDBLite consensus disorder prediction 173 208 - -
Stsc243486g00002 275 MobiDBLite consensus disorder prediction 170 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243486g00002 Stsc-Chr243486 6709 10889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243486g00002 1 275 C3H Transcription Factor Family AT3G55530 76.344 1.22e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243486g00002 K16283 - gmx:100777936 451.44