Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243477g00001 ATGTCCTTCCGTAGTATCGTTCGTGATGTGAGGGATGGGTTTGGAAGCTTATCAAGACGGGGTTTTGATGTAAGGCTTTCCGGCCATCACAGGGGCAAGTCGCATAGTTTGGTCCATGAGTTGCAGGATCAACTGCCGGTATTACAGAACAGCCAGTGGGCTAGTCTTCCACCCGAGCTTCTCCGTGAGGTTGTTAAAAGATTGGAAGCAGATGAGAGTACATGGCCTGCTCGTAAGCATGTGGTTTCGTGTGCCGGTGTGTGCAAGTCTTGGAGAGAAATGTGCAAAGAAGTCATTAACTGTCCTGAGTTCAGTGGGAAGATTACTTTCCCTGTGTCCCTGAAGCAGCCTGGTTCTAGGGATGGACTCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCACCTATTCCTTTGTCTTAGTCCTGCTCTGCTTGTTGAAAATGGGAAGTTTCTTCTTTCGGCTAAACGTACCCGAAGGACAACCTGCACCGAGTATATTATATCAACAGATGCAGATAACATATCAAGATCTAGTAGCACTTATATTGGAAAATTGAGGTCAAATTTTCTTGGCACAAAATTTATAATTTATGATACACAGCCACCCTGTAGCACTGCCCAGCTTTCGCCACCGGGCCGAAGCCGTAGGTTTTCGAAAAAGGTTTCTCCGAAGGTTCCTAGTGGCAGCTATAATATTGCTCGGATCACCTACGAGTTGAATGTCCTTGGTACGAGAGGTCCACGTAGGATGAACTGCACCATGCACACAATCCCTATGTCATCCCTCGAGCCCGGTGGCTCTGTCCCAGGCCAAGCAGAGCTACTTCCGCGTACCCTTGAGGATTCCTTCAGAAGCATATCCTTCTCATCAAAATCAATAGACCAGTCATCCGAGTTCAGCAGCGCCAGGTTCTCCGACATAGTTGGGTTAGGTAATGAAGGAGAAGAGGGTAAAGATAGACCTCTAGTTCTCAAGAACAAGGCGCCGAGATGGCACGAACAGCTTCAATGTTGGTGCCTCAACTTTAGGGGAAGGGTGACCGTCGCCTCCGTCAAGAATTTTCAGCTGATTGCCGCAACACAACCTCCGGCTGGCACTCCTACACCATCGCAGCCAACACAGCCTTCTGACCATGACAAGATCATTCTTCAGTTTGGGAAAGTGGGCAAGGACATGTTCACTATGGACTATAGATACCCTCTTTCTGCATTTCAAGCTTTTGCCATCTGCTTGACTAGCTTTGACACAANNNNNNNNNNGATACATGGTAAGAAAATAGGATTTAATCTTCATTAA 1308 0.4664 MSFRSIVRDVRDGFGSLSRRGFDVRLSGHHRGKSHSLVHELQDQLPVLQNSQWASLPPELLREVVKRLEADESTWPARKHVVSCAGVCKSWREMCKEVINCPEFSGKITFPVSLKQPGSRDGLIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISTDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCSTAQLSPPGRSRRFSKKVSPKVPSGSYNIARITYELNVLGTRGPRRMNCTMHTIPMSSLEPGGSVPGQAELLPRTLEDSFRSISFSSKSIDQSSEFSSARFSDIVGLGNEGEEGKDRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAGTPTPSQPTQPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTXXXXIHGKKIGFNLH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243477g00001 435 Pfam Tub family 114 420 IPR000007 -
Stsc243477g00001 435 FunFam Tubby-like F-box protein 110 424 - -
Stsc243477g00001 435 CDD F-box_AtTLP-like 53 97 - -
Stsc243477g00001 435 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Stsc243477g00001 435 PANTHER TUBBY-RELATED 42 420 - -
Stsc243477g00001 435 Pfam F-box domain 53 98 IPR001810 GO:0005515
Stsc243477g00001 435 SUPERFAMILY Tubby C-terminal domain-like 102 420 IPR025659 -
Stsc243477g00001 435 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Stsc243477g00001 435 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Stsc243477g00001 435 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Stsc243477g00001 435 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Stsc243477g00001 435 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Stsc243477g00001 435 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Stsc243477g00001 435 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Stsc243477g00001 435 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Stsc243477g00001 435 Gene3D - 48 100 - -
Stsc243477g00001 435 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243477g00001 Stsc-Chr243477 624 4476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243477g00001 1 420 TUB Transcription Factor Family AT1G76900 67.333 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc243477g00001 Tub 6.2e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243477g00001 K19600 - pvy:116120437 696.812