Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243470g00001 ATGATTGTTGCTGAATGTTTTCAAGAAGCCCTAAAGAACCGGTGGGAGGCGGTGGCTGCTCGTTTTCCCGGGAAGAACCCTGGGCAGCTACAACATCACTTCCAAGAACTGCTGAATGATATCAATCTCGTCAAAGACGGTTGTGCATGGCCTCCACAGATTATAAAAGACATCACATTCCAACACAGCCCTATTTCCATCCCCATCATCAGTCATCAACAACAACACATGACTACTGTCACAGCGAATAAGGCGGCACCACCGGAGACTATGTTACCGTCGTCAGCCATGGCAGCGGCAACAAGGGAGCAAAACGAACCTACCAACGACAACAGAATCGAACACAGACTTTTACGTAGGGCTACTGGCAACAACAATGAAAGAAAAGTAGAGCATTGGACTCAAGAAGAGCATCGGTTGTTTGTTAAAGGACTTGATGAGTTCGGAAAATCAAAGTGGAAAGAGATTTCAAAACTTTATGTTGGAACAAGAAATCCCACACAAGTTGCTAGCCATGCTCAAAAATACTTTAACCATAAGAAGAAATCTAAAGGAGAATGTCGAAGAAAAAACATCCAAGAAAAAACATCCATGACAACTGATCATCGAATTGATTTGTGCCATAATCTGAGTGGTTTAATGGATGAGAGGATTTGCTGCAAAGAAGAGGAGATTACTCAAGCAAGAAGAACACACAAATGTGAATAG 708 0.4266 MIVAECFQEALKNRWEAVAARFPGKNPGQLQHHFQELLNDINLVKDGCAWPPQIIKDITFQHSPISIPIISHQQQHMTTVTANKAAPPETMLPSSAMAAATREQNEPTNDNRIEHRLLRRATGNNNERKVEHWTQEEHRLFVKGLDEFGKSKWKEISKLYVGTRNPTQVASHAQKYFNHKKKSKGECRRKNIQEKTSMTTDHRIDLCHNLSGLMDERICCKEEEITQARRTHKCE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243470g00001 235 CDD SANT 133 177 IPR001005 -
Stsc243470g00001 235 ProSiteProfiles Myb-like domain profile. 125 177 IPR001005 -
Stsc243470g00001 235 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 202 IPR043363 -
Stsc243470g00001 235 Pfam Myb-like DNA-binding domain 132 177 IPR001005 -
Stsc243470g00001 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 181 IPR017930 -
Stsc243470g00001 235 ProSiteProfiles SANT domain profile. 133 184 IPR017884 -
Stsc243470g00001 235 SUPERFAMILY Homeodomain-like 128 182 IPR009057 -
Stsc243470g00001 235 Gene3D - 3 49 - -
Stsc243470g00001 235 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 180 IPR006447 GO:0003677
Stsc243470g00001 235 Gene3D - 132 183 - -
Stsc243470g00001 235 CDD SANT 12 38 IPR001005 -
Stsc243470g00001 235 SMART sant 5 40 IPR001005 -
Stsc243470g00001 235 SMART sant 129 179 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243470g00001 Stsc-Chr243470 452 2207 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc243470g00001 Myb_DNA-binding 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243470g00001 - - ahf:112708481 127.872