Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243447g00001 ATGGCAAATTTCAGACGCGCTTTATATAAAGGTGTGCTCCGAAACGAAGTAGGCTGGTTTGATAAATCTGAAAACACTGTTGGTTCATTAACTTCGCGCATCATCAGTGACACTTCCCTGGTCAAAATCATAATTGCGGATCGCATGGCTGTGATTGTGCAATGCATTTCCTCCATATTGATAGCAACAGTTGTCAGCATGTATGTTAACTGGAGAATGGGTTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATAGGTGGTCTCATTCAAGCAAAGTCTGCCAAAGGCTTTTCAGGTGACTATGCTGCTTCACATTCCGAGCTTGTTGCTCTTGCATCTGAGTCTGCATCCAACATAAGGACTATAGCATCATTCTGTCACGAAGATCATGTAGTCATGAAAGCAAAGACATCTCAGGAAATTCCAATGAGAAAGTACAGGAATGAAAGCATCAAATATGGGATAGTTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTAGCTTTGTGGTATACAACAATTCTGGTTGAAAGACATCAAGCCAGCTTTAAAAATGGAATACGAGCATACCAAATTTTTTCTCTCACTGTTCCATCTATCACAGAGTTATATACACTCATCCCAACTGTCATCTCTGCTATCAAGGTACTAACACCAGCATTCGAAACTCTTGATCGTAAGACAGAAATCGAACCAGATACACACGATGATTCCCAACCGGAGAGGATCCTAGGAGAAGTTGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGGCCTGCAGTCACAGTTCTGAACAAGTTCAGTTTACAAATTGAAGCTGGATCAAAAGTGGCTTTTGTAGGACCAAGTGGTGCAGGGAAGTCCTCTGTTTTGGCCCTTATACTAAGGTTTTATGATCCTGCGGCAGGAAAGGTATTAATTGATGGGAGAGATATACGAGAATATAATCTAAGATGGCTAAGGACTCAAATAGGGCTAGTGCAACAAGAACCACTTCTTTTTAACTGCTCTATAAGAGACAACATTTGCTATGGTCATGATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAGAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAGAGGGATATAACACTGTTGTTGGGGAGAAAGGATGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCTAGAACCTTACTAAAGAAGCCTGCAATATTACTCCTTGATGAAGCAACAAGTGCTCTTGATGCTGAGTCGGAAAGAACTATTGTGAGTGCTTTAAAAGCAATAAATGTCAAGGAGGAGAGTGGCTTGTGTTCAAAGACTACCCAGATTACCATAGCTCACAGACTTTCCACAGTCATAAATTCAGATATCATAGTTGTCATGGACAAGGGTAAGATTGTAGAGATGGGATCACACTCAACCCTAATAACAAATGGGGAAGGACTCTATTCAAGGTTATTCAAGCTACAGAGCTTTGATGAATCCTCATAA 1512 0.4101 MANFRRALYKGVLRNEVGWFDKSENTVGSLTSRIISDTSLVKIIIADRMAVIVQCISSILIATVVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYAASHSELVALASESASNIRTIASFCHEDHVVMKAKTSQEIPMRKYRNESIKYGIVQGFSLCLWNIAHAVALWYTTILVERHQASFKNGIRAYQIFSLTVPSITELYTLIPTVISAIKVLTPAFETLDRKTEIEPDTHDDSQPERILGEVEFENVKFNYPSRPAVTVLNKFSLQIEAGSKVAFVGPSGAGKSSVLALILRFYDPAAGKVLIDGRDIREYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGHDGASESEIVEVAREANIHEFVSNLPEGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVSALKAINVKEESGLCSKTTQITIAHRLSTVINSDIIVVMDKGKIVEMGSHSTLITNGEGLYSRLFKLQSFDESS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243447g00001 503 SUPERFAMILY ABC transporter transmembrane region 2 236 IPR036640 GO:0005524|GO:0016020
Stsc243447g00001 503 Pfam ABC transporter 269 418 IPR003439 GO:0005524
Stsc243447g00001 503 CDD ABC_6TM_Pgp_ABCB1_D2_like 3 234 - -
Stsc243447g00001 503 SMART AAA_5 278 472 IPR003593 GO:0016887
Stsc243447g00001 503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 216 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc243447g00001 503 Gene3D ABC transporter type 1, transmembrane domain 2 213 IPR036640 GO:0005524|GO:0016020
Stsc243447g00001 503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 251 495 IPR003439 GO:0005524
Stsc243447g00001 503 Pfam ABC transporter transmembrane region 4 190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc243447g00001 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 497 IPR027417 -
Stsc243447g00001 503 FunFam ABC transporter B family member 1 241 498 - -
Stsc243447g00001 503 ProSitePatterns ABC transporters family signature. 390 404 IPR017871 GO:0005524|GO:0016887
Stsc243447g00001 503 CDD ABC_MTABC3_MDL1_MDL2 251 497 - -
Stsc243447g00001 503 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 493 IPR039421 -
Stsc243447g00001 503 Gene3D - 241 502 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243447g00001 Stsc-Chr243447 2821 4782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243447g00001 5 499 Calmodulin-binding Proteins AT2G36910 44.311 2.15e-137 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243447g00001 K05658 - gmx:121172606 842.802