Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243356g00002 ATGGGAGAAGAGGTTGTTCTGTTGGACGCATGGGCAAGCATGTTTGGTATGAGGGTCAGGATTGCACTTGCTGAAAAGGGTGTCAGTTATGATTACAAAGAAGAGTATCTTATTAAGGGTAAAAGCCCTTTTCTTCTTCAGATGAATCCAATTCACAAGAAGGTTCCAGTTCTGATCCATAATGGTAGACCAATATGTGAATCTGCAATTATAGTTGAGTACATTGATGAGGTTTGGAATCACAAAAATCCAATCATGCCCTCCGATCCTTATGACAGAGCTCAAGCTAGATTCTGGGTTGATTTCATTGACAAAAAGATCTATGAAACTTGGAGAAAAATGTGGCTGTCAGAAGGAGAAGAGCATGAGACATGGAAGAAGGAATTAATCTCCATTTTCAAGCAACTCGAGGAGACATTGGGAGACAAAGCATTTTATGGAGGTGACACTTTTGGGTTCCTTGATCTTGGTCTGATCCCATTCTACAGTTGGTTTTATACCTTTGAGACTTATGGCAATTTCAAAATGGAAGCAGAGTGTCCTAAACTAATAGCTTGGGCCAAAAGGTGCATGCAAAGAGACACTGTCTCCAAGACACTTCCTGATGAAAAGAAAGTGTATGATCATGTTCTGGCTATGAGAAAAGCACTTGAAAAATAA 660 0.3985 MGEEVVLLDAWASMFGMRVRIALAEKGVSYDYKEEYLIKGKSPFLLQMNPIHKKVPVLIHNGRPICESAIIVEYIDEVWNHKNPIMPSDPYDRAQARFWVDFIDKKIYETWRKMWLSEGEEHETWKKELISIFKQLEETLGDKAFYGGDTFGFLDLGLIPFYSWFYTFETYGNFKMEAECPKLIAWAKRCMQRDTVSKTLPDEKKVYDHVLAMRKALEK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243356g00002 219 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Stsc243356g00002 219 CDD GST_C_Tau 90 213 IPR045074 GO:0004364|GO:0006749
Stsc243356g00002 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Stsc243356g00002 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 217 IPR010987 -
Stsc243356g00002 219 Gene3D - 89 218 - -
Stsc243356g00002 219 FunFam Glutathione S-transferase U20 89 219 - -
Stsc243356g00002 219 Gene3D Glutaredoxin 1 88 - -
Stsc243356g00002 219 Pfam Glutathione S-transferase, C-terminal domain 125 189 - -
Stsc243356g00002 219 FunFam Tau class glutathione S-transferase 1 88 - -
Stsc243356g00002 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 208 IPR045073 -
Stsc243356g00002 219 SFLD Glutathione Transferase (cytosolic) 2 217 IPR040079 -
Stsc243356g00002 219 CDD GST_N_Tau 5 79 - -
Stsc243356g00002 219 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Stsc243356g00002 219 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Stsc243356g00002 219 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243356g00002 Stsc-Chr243356 5433 7348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243356g00002 1 215 Glutathione S-transferase Gene Family AT1G78380 62.326 1.86e-102 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243356g00002 K00799 - gmx:547950 383.645