Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243339g00001 ATGGCGGCAGTTCCTCACGTTGACTGGACTAAGGAAAAGAAAACTCTACACCAGAATGACGACTGGTTCGAACGCTTATATTCGCTACACGAAAGGGATGCAGAGGGAGGTTACCAATCAATGACTGCCTGCATTTCCATGGAAGATGTGAAGAGAGTCTTGAAATCGAAGAATGATGTGACAATGGTGTTGAACGAGGCGAAGAAGATCCTCCCCAGGGCCACTGAAATGTTCGCGCAAGAGTTGGCTCTTCGTGCCTTCATCCACGCCAAACAGGAGGATAGAAAGCAAATCATGCTCAAAGATTTCACTGCCACACTCGTTGACAATTATGATATCTACCAATTCTTGGTTGATCTTTATGTGAAGGTAGATCTTGATGACAAGCCTTGA 393 0.4529 MAAVPHVDWTKEKKTLHQNDDWFERLYSLHERDAEGGYQSMTACISMEDVKRVLKSKNDVTMVLNEAKKILPRATEMFAQELALRAFIHAKQEDRKQIMLKDFTATLVDNYDIYQFLVDLYVKVDLDDKP 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243339g00001 130 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 102 IPR003958 -
Stsc243339g00001 130 Gene3D Histone, subunit A 7 121 IPR009072 GO:0046982
Stsc243339g00001 130 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 43 122 - -
Stsc243339g00001 130 SUPERFAMILY Histone-fold 54 120 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243339g00001 Stsc-Chr243339 7080 7472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243339g00001 44 129 CCAAT-HAP5 Transcription Factor Family AT1G54830 34.884 5.64e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc243339g00001 CBFD_NFYB_HMF 2.5e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243339g00001 - K04648 mrr:Moror_5527 31.9574