Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243302g00002 ATGAGTCCTAACTTTCCTGGTGTTCCTCGTACTTTCTTCTCTCAACAAAAGGGATGTAAGGTTACTCTTTACCAAGATGCTCACATCCCAGGCAGTTTTGCCCCGAGAATAGTGGTTGATAGAGGTAAGACTTATAAACCTCAAAGATGCTGGGAGGACATGTATGATGCAATCAATGAAGCGAAGCACTTGATATATATCGCTGGCTGGTCTGTTTACACTAAGATTTCTTTGGTAAGAGATCCAAATAGGCCACATCCTGAAAGAAGCGAAACACTTGGTGAGTTGCTTGTGAGAAAGGCAAACGACAACGTTAAGGTTGTAGTGCTTCTTTGGAATGATATAACAGATATTCCAGTAATCGAAAAGCCTGCAATAATGCACACTCATGATAAAGAAACCCAAGCGTATTTTGAACATACTAAGGTGCATTGTGTTTTATGTACTCGTGGGAGTATTTTCCAAGGTAGTAATGTTTTCCTCAGTCATCACCAAAAAATTGTGGTGGTGGACGCTAAGTTGCCAAATAATGGAGATGTGTCAAACAAAAGAAGAATAGTGAGTTTCATTGGAGGTCTTGATCTCTGTGACGGAAGATATGATACTCCAACTCATTCTCTTTTTAGAACCTTGAATCATGAACACAAGCAAGATTTCTATCAACACTGCATTGCTGGTGCTACAATCGAAAAAGGTGGGCCGAGAGAGCCATGGCATGACGTGCACTGTAAACTTGAAGGGCCAATTGCATGGGATGTTTATTACACCTTTGTGGAGAGGTTTAAGAAGCAAGGCACAGATCAAAGCATGCTTCTTTCAGAGGAAGATTTTAAACTTTTCATTGTTGCACCATCTCAAGTAATTGACCCTGATGAGAAGGACGCGTGGAATGTTCAGTTATTCAGATCCATTGATGACAATGCTACCGTTGGGTTTCCAGAATCTGTTGAGGATGCTTTCAAATTCGGGCTTGTCCATGAGGAGGACAAGACGGTAGATAGAAGCATTCAAGATGCATATATTCAAGCTATTAGGCGGGCGAAGAATTTCATCTATATTGAGAATCAGTATTTCATAGGAAGCGATTTCGATTGGAGTGTTGAGGAGAAAAGAGAGCATCCTGATGCTGTGAATCTGATACCAAAGGAGCTTTCGCTTAAGATTGTTAGCAAGATCAAAGCCAGGGAAAGGTTTGTTGTGTATGTTGTTATTCCGATGTGGCCGGAGGGTGTCCCAGAGAGCGGAAATGTTCAAAAAATATTATACTTGCAGAGGTGGACCATAGAGATGATGTACAAAGACATTGTTCAAGCACTCAATGAAGAAGAACTAGATGAAGATCCTCAACAATATTTGGCATTCCTTTGTCTTGGCAATCGAGAGGTGAAGAAGGATGGAGAATATGACCCTCCAGAAAAACCACAAAAAGGTTCTGATTACTTGAAATCCCAGGAGGTCAGACGCTTCATGATTTACGTGCATTCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGATCTGCCAACATCAATCAAAGATCAATGGATGGAGGAAGAGACACAGAAATCGCCATGGGAGCTTACCAACCGTACCATTTGGCTACCAACTCTGGCGGCGCGAGAGGCCAAATCCACGGCCTCCGCATGTCCCTATGGTATGAGCACCTCGGCAAACTTGACAAAGCCTTCCTCAACCCCGAAAGCAAAGAATGTATTAAGAAAGTGAACCAACTTGCTAAAGTGTATTTTGATGAATATAGGGAGTTGCCCATTCAAGACCTTCCTGGACACCTACTCCATTATCCTATTAAAATTTCTGCAGATGGAACCGTCACAAATATCCAAAATTTGGAGCACTTCCCTGACACAAGTGGTAGTATTCTAGGCAAGAATGCCTCTGATATAGTTACTCGTGTCCTTCCGGATATCGTGTATGACATTTATCGACCAAATAATCCCCCTGCTCATCAATCTGGACAAGTTCCACCACCATAG 2001 0.4188 MSPNFPGVPRTFFSQQKGCKVTLYQDAHIPGSFAPRIVVDRGKTYKPQRCWEDMYDAINEAKHLIYIAGWSVYTKISLVRDPNRPHPERSETLGELLVRKANDNVKVVVLLWNDITDIPVIEKPAIMHTHDKETQAYFEHTKVHCVLCTRGSIFQGSNVFLSHHQKIVVVDAKLPNNGDVSNKRRIVSFIGGLDLCDGRYDTPTHSLFRTLNHEHKQDFYQHCIAGATIEKGGPREPWHDVHCKLEGPIAWDVYYTFVERFKKQGTDQSMLLSEEDFKLFIVAPSQVIDPDEKDAWNVQLFRSIDDNATVGFPESVEDAFKFGLVHEEDKTVDRSIQDAYIQAIRRAKNFIYIENQYFIGSDFDWSVEEKREHPDAVNLIPKELSLKIVSKIKARERFVVYVVIPMWPEGVPESGNVQKILYLQRWTIEMMYKDIVQALNEEELDEDPQQYLAFLCLGNREVKKDGEYDPPEKPQKGSDYLKSQEVRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAYQPYHLATNSGGARGQIHGLRMSLWYEHLGKLDKAFLNPESKECIKKVNQLAKVYFDEYRELPIQDLPGHLLHYPIKISADGTVTNIQNLEHFPDTSGSILGKNASDIVTRVLPDIVYDIYRPNNPPAHQSGQVPPP 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243302g00002 666 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 489 516 IPR001736 GO:0003824
Stsc243302g00002 666 Pfam PLD-like domain 341 524 IPR025202 -
Stsc243302g00002 666 Pfam Phospholipase D C terminal 562 632 IPR024632 -
Stsc243302g00002 666 Pfam Phospholipase D Active site motif 161 199 IPR001736 GO:0003824
Stsc243302g00002 666 SUPERFAMILY Phospholipase D/nuclease 336 574 - -
Stsc243302g00002 666 SUPERFAMILY Phospholipase D/nuclease 4 263 - -
Stsc243302g00002 666 PANTHER PHOSPHOLIPASE D 3 633 IPR015679 -
Stsc243302g00002 666 Gene3D Endonuclease Chain A 282 533 - -
Stsc243302g00002 666 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 159 199 IPR001736 GO:0003824
Stsc243302g00002 666 SMART pld_4 489 516 IPR001736 GO:0003824
Stsc243302g00002 666 SMART pld_4 159 199 IPR001736 GO:0003824
Stsc243302g00002 666 Gene3D Endonuclease Chain A 37 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243302g00002 Stsc-Chr243302 8167 11519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243302g00002 2 631 Phospholipase D Gene Family (Wang group) AT1G52570 62.031 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243302g00002 K01115 - egr:104450554 820.076