Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243302g00001 ATGGTAAGATTAGTAAGGAGTTTTGATCATCATACAATCATTTCTCTGGATGAAGTAAGGATTGAAAGCAGGGGAGTAAAAGACCCTATTAAGAACCCTAAATTGGAAGAGTCTTTTTATATTCGTTGTGCCCACATGACATCAAATATCATATTCACCTTGCACAGTGAAAACTACGTGCTTTCTGGAATAACTGTTATGGGAGAAGCATATATAGCTGTTGATGAGAAAATCTTAAATGGTGATGAAGTAGACAAATGGGTTGACATAGTTGATGGTAGCAAAAGACCCATATCTGGGGCTCCAAAGATCCATGTCAAGCTACAATATTTTGATGCTAAACGACACCAAAACTGGTCTCAAGGAATCAAAGCTCCTGATTTCCCGGGAGTTCCTCGCACTTTCTTCTCCCAACAAAAGGGATGCAAGGCTACTCTTTACCAAGATGCTCATGTTCTACATGATTTTTTCCCAAGAATAGTGCTCCACGGAGGTGAGACTTACAAGCCTCAAAGATGCTGGGAGGATATATTTGATGCAATCAATGAAGCAAAACATTTTATATATATTGCTGGTTGGTCTGTTTACACTGAGATTTCTCTCATAAGAGATCCAACGAGGCCAAAGCATAGGGGAGACATAACACTTGGTGAGCTTCTCAAGAAAAAAGCAAAAGATGATGGAGTCAAGGTTGTGCTGCTTCTATGGCAGGATGGAATTCAAGTTCCAATAATTGGAAATTACATCAGCATCATGCATACTCATGATAAAGAAACCCAATACTATTTTAATGACACTAACGTGCATTGCGTTTTATGTCCTCGTGACAGTACTAATTTCACTCATCATCAAAAGATTGTGGTGGTGGATGCTAAGTTGCCAAATGGAGATAAGTCAAATAAAAGAAGAATAGTGAGTTTCATTGGAGGTATTGATCTCTGTGATGGGAGATATGATACTCAATCTCACTCTCTTTTTCAAACTTTAGCAGCTGAACACAGTAAGGATTTTTATCAACCAAGCATTGATGGCTCTTCAATTGAAAAAGGTGGTCCTAGGGAGCCATGGCATGACGTGCATTGCAAGCTTGAAGGGTCAATCGCATGGGATGTTTATTTCACTTTTGTCCAGAGATTTAAGAAACAGGGCACATATCAGGGCATGCTTCTTTCAGAAGAAAAGTTTAGAGATATCATCATAGCACCATCTCAAGCAACAAACCCTGATGATAATGACAGTTGGAACATTCAGTTATTCAGATCTATTGATGATACAGCTACTCTTGGGTTTCCGGAATCTTCTAAAGAAGCCTTTAATGTTGGGCTTGTTACTGAAGAGAACAAGATGATAGATCGTAGCATTCAAGATGCATACATAAATGCTATTCGTCGTGCTAAGAATTTCATCTACATTGAGAATCAGTTCTTCATAGGAGGCGTTTTCGGTTGGAGTGCGGATAACACCGAATTTGATGCTTGGAATCTGATCCCAAAGGAGCTTTCACTAAAAATTGTTAGTAAGATTAAAGCAAAAGAGAAGTTCATGGTGTATGTAGTGATTCCAATGTGGCCAGAGGGTGTTCCAAAAGATAATAAGGTTACTGGACCTGGAACTGTTCAGAAGATACTGTATTTGCAAAGGAGAACCATAGAGATGATGTATAGGGACATTGTTGAAGCACTCAAGGAAGAGAAAATTGAAGAAGATCCTCATAAATATTTATCATTCTTCTGTCTTGGCAATAGAGAGGTGAAGAAGGATGGAGAATATGTGCCTCCAAAAACACCAGAACAAGGTTCCCATTACCAAAAAGCCCAAGAGGCCAGACGCTTCATGATTTATGTGCATTCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGAGGAAGAGACTCCGAGATTGCCATGGGAGCTTATCAACCGCACCATTTGGCCACCAACCAAGGTGGT 1989 0.3947 MVRLVRSFDHHTIISLDEVRIESRGVKDPIKNPKLEESFYIRCAHMTSNIIFTLHSENYVLSGITVMGEAYIAVDEKILNGDEVDKWVDIVDGSKRPISGAPKIHVKLQYFDAKRHQNWSQGIKAPDFPGVPRTFFSQQKGCKATLYQDAHVLHDFFPRIVLHGGETYKPQRCWEDIFDAINEAKHFIYIAGWSVYTEISLIRDPTRPKHRGDITLGELLKKKAKDDGVKVVLLLWQDGIQVPIIGNYISIMHTHDKETQYYFNDTNVHCVLCPRDSTNFTHHQKIVVVDAKLPNGDKSNKRRIVSFIGGIDLCDGRYDTQSHSLFQTLAAEHSKDFYQPSIDGSSIEKGGPREPWHDVHCKLEGSIAWDVYFTFVQRFKKQGTYQGMLLSEEKFRDIIIAPSQATNPDDNDSWNIQLFRSIDDTATLGFPESSKEAFNVGLVTEENKMIDRSIQDAYINAIRRAKNFIYIENQFFIGGVFGWSADNTEFDAWNLIPKELSLKIVSKIKAKEKFMVYVVIPMWPEGVPKDNKVTGPGTVQKILYLQRRTIEMMYRDIVEALKEEKIEEDPHKYLSFFCLGNREVKKDGEYVPPKTPEQGSHYQKAQEARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAYQPHHLATNQGG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243302g00001 663 Pfam Phospholipase D Active site motif 612 638 IPR001736 GO:0003824
Stsc243302g00001 663 Pfam Phospholipase D Active site motif 279 317 IPR001736 GO:0003824
Stsc243302g00001 663 PANTHER PHOSPHOLIPASE D 24 657 IPR015679 -
Stsc243302g00001 663 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 278 317 IPR001736 GO:0003824
Stsc243302g00001 663 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 638 IPR001736 GO:0003824
Stsc243302g00001 663 Gene3D Endonuclease Chain A 163 407 - -
Stsc243302g00001 663 Gene3D Endonuclease Chain A 408 659 - -
Stsc243302g00001 663 SMART pld_4 611 638 IPR001736 GO:0003824
Stsc243302g00001 663 SMART pld_4 278 317 IPR001736 GO:0003824
Stsc243302g00001 663 SUPERFAMILY Phospholipase D/nuclease 452 652 - -
Stsc243302g00001 663 SUPERFAMILY Phospholipase D/nuclease 114 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243302g00001 Stsc-Chr243302 23 3067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243302g00001 11 661 Phospholipase D Gene Family (Wang group) AT3G15730 58.982 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243302g00001 K01115 - gmx:100784434 808.52