Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243300g00003 ATGATCGTGAGCCAGAACATGGTAGCGGAAGCGGAGATTATCTGTAAGCAGAGTATTCCGATGCTGGACATGAAGTATCATCTGTGCGTGGCGCAAGAACAAAACGTTAAGATTGAGGTCTCACCAACCTCTCCTTCTGTCCCCATCTTTGGTCAAGATGCATGCTCTGAGGTTCAAGACTCCATTATGGAGACTCCTGTGATTGAGTTTGTTCCAAATGTGCGTTCTGGTAGCTTTGCAGAGATCGGACCACGTGTATCTATGGATGATGAACACATTTGCATAGATGATCTAGCTGCCCACCTTGGATTTGTGTTCAAGTATCCAATACCGAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGAAGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGGCATTTGCTGGTTGCTAATGCTGGCGACTGTCGAGCAGTTCTTTGCAGGAGAGGTAAAGCTGTAGAGATGTCACAAGATCATAGGCCAAGTTATTTACCAGAAAGGAAGAGAGTGGAGGAGTTGGGCGGCTTCATTGATGATGGATATCTTAATGGTTATCTTTCAGTGACTCGTGCCCTTGGTGATTGGGACTTCAAGTTTCCACTTGGTATTGCATCCCCTCTTATAGCAGAGCCAGATGTTCAGCTGGTTACATTGACCGAAGATGATGAGTTCTTAATCATTGGCTGTGATGGGATCTGGGATGTTATTTCCAGCCAAGTTGCCATTAGCCTTGTTCGTCGGGGATTAAGAAGGCACGACGACCCACAACAATGTGCACGAGAACTGGTGAAGGAAGCATTACGCCTAAATACATCAGACAATCTCACTGTGATTGTCATATGCTTGTCCACCGTCCAAAGCATTGTTGAAGCATGCTCTTCACCCTGGAGGAGAAGATTCAAGGCTTGTAACGTGTCGGAAGAGGCCCGTAATTGA 948 0.461 MIVSQNMVAEAEIICKQSIPMLDMKYHLCVAQEQNVKIEVSPTSPSVPIFGQDACSEVQDSIMETPVIEFVPNVRSGSFAEIGPRVSMDDEHICIDDLAAHLGFVFKYPIPSAFYAVFDGHGGPEAAAFVKRNAMRHLLVANAGDCRAVLCRRGKAVEMSQDHRPSYLPERKRVEELGGFIDDGYLNGYLSVTRALGDWDFKFPLGIASPLIAEPDVQLVTLTEDDEFLIIGCDGIWDVISSQVAISLVRRGLRRHDDPQQCARELVKEALRLNTSDNLTVIVICLSTVQSIVEACSSPWRRRFKACNVSEEARN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243300g00003 315 SMART PP2C_4 65 284 IPR001932 -
Stsc243300g00003 315 Pfam Protein phosphatase 2C 136 278 IPR001932 -
Stsc243300g00003 315 Gene3D - 55 135 IPR036457 -
Stsc243300g00003 315 ProSiteProfiles PPM-type phosphatase domain profile. 75 286 IPR001932 -
Stsc243300g00003 315 CDD PP2Cc 74 286 IPR001932 -
Stsc243300g00003 315 Gene3D - 136 294 IPR036457 -
Stsc243300g00003 315 PANTHER PROTEIN PHOSPHATASE 2C 68 133 IPR015655 GO:0004722|GO:0006470
Stsc243300g00003 315 SUPERFAMILY PP2C-like 67 287 IPR036457 -
Stsc243300g00003 315 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243300g00003 Stsc-Chr243300 9565 11307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243300g00003 53 287 PP2C-type Phosphatase Gene Family AT2G33700 47.535 1.32e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Stsc243300g00003 PP2C 2.2e-49 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243300g00003 K14803 - qsu:112022346 346.28