Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243298g00001 ATGACCATGGGCAAGAAGCGGAAGGTCGCACCCAAATCATCTCAAACCGTTGAGCCCCCCGCCAAGCAGCACCAACCTGAACCACAACAAGAGGAATACGAAGAGGTTGAGGAAGAAGTAGAAGAGGAGGTCGAAGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGACGAACAAGAAGAAGGAGGTAACGAACAAAATCAACAACAACAACTGGACGACGATGACGACCCCATCCCGAAGCTTCTAGAACCTTTTGGTAAGGACCAGATCTTGAATCTTCTCTGCGAAGCTGCCGCCAAACACCGCGACGTCGCCGACCGGATTCGCCGCATCGCCGACGAAGACGCTGTCCACCGGAAAATATTCGTACACGGCCTCGGCTGGGACACCACCGCCGAAACCCTAATCAGCGCGTTCAGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGATAAGATCTCCGGCAAGTCTNNNNNNNNNNTCAAGAACCGCCGCGGCGCCCGGAATGCCCTCAAGCAGCCGCAGAAGAAGATCGGTAACCGCATGACGGCGTGCCAGCTGGCATCTATTGGCCCTGTCCAGCAGTCGGCACAGCAGCCTGCTGCCGCTGCCGCCTCTTCTGGGCCGGCTGTCTCCGAATATACACAGAGAAAGATCTACGTGAGCAACGTTGGGTCCGAATTGGACCCGCATAAGCTGATGGCGTTCTTCTCGAGGTTCGGTGAGATCGAGGAAGGGCCACTGGGGCTCGACAAAGTCACTGGGAAGCCAAAGGGGTTCTGTTTGTTCGTCTACAAGAGCGTTGAGAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACACGTGTTGCATTGCCAGAAGGCCATTGATGGACCCAAGCAAGGGAGGATGCAGATGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGGAACGACAACGCAGGGTTTGGTGTTGGTGTTGGTGGTGGCGTTGGTAACAATGTGCAGGGGCATTTGATGGTGCCTGCCAATGCCGCAGCCGCTCCTATGGGTGTGAACCAAGCTGCTGTACCACCGCTGAATCCAGCGCTCGGGCAGGCATTGACAGCCCTGCTTACTCAGCAGGGTGCTTCATTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCTGCTGTTCCAGCCGCAGCGGTACACACGATACAGGGTGGTTACAGCGCTCAGCAGAGTATAAGCCCTGGTGTTATGAGCACGTACGGGAGTCAGGTAGGGCTGCAGGCGGCTTATCCGAACCAGCAGGTCGGGCAGGGTGGGAGCTCTGGAAGAGGGCAACCTGGGGTTGGGCAGTATGGTGGTGTTGCTCCTTATATGGGCCACTAG 1410 0.5596 MTMGKKRKVAPKSSQTVEPPAKQHQPEPQQEEYEEVEEEVEEEVEEEEEEEEEEEEEEEEDEQEEGGNEQNQQQQLDDDDDPIPKLLEPFGKDQILNLLCEAAAKHRDVADRIRRIADEDAVHRKIFVHGLGWDTTAETLISAFSQYGEIEDCKAVTDKISGKSXXXXKNRRGARNALKQPQKKIGNRMTACQLASIGPVQQSAQQPAAAAASSGPAVSEYTQRKIYVSNVGSELDPHKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVESAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQMQHNVPRTQFQRNDNAGFGVGVGGGVGNNVQGHLMVPANAAAAPMGVNQAAVPPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSAVPAAAVHTIQGGYSAQQSISPGVMSTYGSQVGLQAAYPNQQVGQGGSSGRGQPGVGQYGGVAPYMGH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243298g00001 469 Gene3D - 203 316 IPR012677 -
Stsc243298g00001 469 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 27 310 - -
Stsc243298g00001 469 MobiDBLite consensus disorder prediction 441 461 - -
Stsc243298g00001 469 SMART rrm1_1 125 193 IPR000504 GO:0003723
Stsc243298g00001 469 SMART rrm1_1 225 297 IPR000504 GO:0003723
Stsc243298g00001 469 SUPERFAMILY RNA-binding domain, RBD 124 201 IPR035979 GO:0003676
Stsc243298g00001 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 197 IPR000504 GO:0003723
Stsc243298g00001 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 307 IPR000504 GO:0003723
Stsc243298g00001 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 179 IPR000504 GO:0003723
Stsc243298g00001 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 295 IPR000504 GO:0003723
Stsc243298g00001 469 SUPERFAMILY RNA-binding domain, RBD 211 323 IPR035979 GO:0003676
Stsc243298g00001 469 Coils Coil 30 69 - -
Stsc243298g00001 469 MobiDBLite consensus disorder prediction 31 67 - -
Stsc243298g00001 469 MobiDBLite consensus disorder prediction 1 89 - -
Stsc243298g00001 469 Gene3D - 21 202 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243298g00001 Stsc-Chr243298 5603 8276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243298g00001 223 303 C2H2 Transcription Factor Family AT2G19380 33.333 1.21e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243298g00001 K12741 - qsu:112025393 460.685