Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243294g00003 ATGGCTCCGCCGCCGCCAAACGGCTACCGTCAAGAAACGGTGATTGACATAAAGAATAGCAATAAAACCACTCGCCAAACAGTGGGCTTCACCGGCGGTCTTGAGTTTTTCAACCTCACCTACACCGTCGCCAAGAAGTTGAAGGTGGATGGAAAGTGGTCGAGTGAAGACGTGGACTTGCTCCACGACATCACTGGGTACGCACCGAAGGGCAGCATCACGGCGGTGATGGGGCCCAGCGGTGCGGGAAAGTCGACGTTCTTGGACGGTCTTGCTGGGAGGATAAAGAGTGGGAGCCTGAAAGGAAGGGTTTCATTGGATGGTGCAACTGTGAGTGCAAGCTTGATAAAGAGAACATCTGCATATATCATGCAGGAGGATAGGCTTTTTCCGATGCTCACTGTTTATGAGACTTTGATGTTTGCTGCTGATTTTCGATTGGGAGATCTCTCGCTAGCTGATAAGAGGCAGAGAGTGGAGAAGTTGATAGAGCAACTTGGCTTATCGACATCAAGAAACACGTACATAGGAGACGAAGGAACAAGAGGAGTTTCGGGGGGAGAGCGGAGGAGGGTGTCAATAGGGGTGGACATCATCCACGGACCATCCCTTCTCTTCCTGGACGAGCCAACCTCAGGCCTAGACTCCACTAGCGCACACAGTGTCATCGAAAAGGTGCACGACATCGCTCGCAGCGGCAGCACCGTCATCCTCACCATCCACCAACCTTCTTCAAGAATCCAACTCCTCCTCGACCATCTCATCATCCTCGCCCGCGGCCAGCTCATGTTCCAAGGCTCCCCTGACGACGTCACACACCATTTGTCTCGCATGTCCCGCAAGATACCAAAGGGCGAGAACCCTATCGAGCATCTCATTGACGTGATCCAAGAATACGATCAATGTGAGGTTGGAGTGGAGGCACTCGCTGAGTTTGCACGCACTGGATTGAAGCCCCCTCCGTTGAAGGACGGTATGTCTACTGTTGAGCCATCACCCTCGCCGGTGAGGGCGCCGCATCGGGGTGGAGGGCGGCAAGGACGTGGCTACGAGGAGAAGTCGTTGGAGATGTCTCGGACGTCGCAAGTGAGTAGGAGAGTTGCAGATGAGTATGATCACAGTTTGAGAAGTCCTTACAACAACAATTCCCAGTCGTGGAGCACCAGCCACAGCGCTATGTTTCTCAAGTTCACTCCTTCACGTCTCAGAAATGAGTCCAAGCCACACAAGAATAATCCCGCAGGACATGGTTCTCCAGGGTACTATGCATACTCAAGCGAGATTCTGGCAGCGACACCAACCCCTCACAGCAGTGACTACACGGTGAACGAGAATGACTACCTTACACCAACAATGGCCACTGCCTCGCCGGAGCACCTGGCTGCCAAATTTGCCAATTCCTTCTTCTCGGAAATATGGATCTTGATGCGCCGCAACTTCATCAACATCCGAAGAACCCCAGAGCTGTTCCTGTCTCGGCTCATGGTGCTCACCATCATGGGGTTCATGATGGCCACAATGTTCCACAACCCCAAAGAGAATCTCCAGGGAATCACGAACCGCCTCAGCTTCTTCATCTTCACCGTCTGCCTCTTCTTCTTCTCCTCAAACGACGCCGTCCCCGCCTTCATCCAAGAACGCTTCATCTTCATCAGAGAAACCTCTCACAACGCCTACAGAGCCTCTTCCTACACCATTGCAGGCTTAATCACTCACATGCCCTTCCTTCTCCTCCAAGCTTCCGCTTACGCCGGCATTGTTTGGTTTGCCCTAACCCTAAGAGGCCCCTTCTACTACTTCCTCATCGTCCTCTTCGTCTCTCTTCTCTCCACGAACTCCTTCGTGGTGTTCGTGAGCTCCGTGGTTCCCAACTATATACTAGGGTATGCAGCTGTGATTGCTTTCACTGCGTTGTTCTTCTTGTTTTGCGGATACTTCTTGAGCAGTCATGACATACCGGTTTATTGGCGGTGGATGAACAAGATTTCGACGATGACGTACCCTTACGAAGGGCTACTGATGAACGAGTATCAGACAGATAAGAGTTTTGCGGTGAACCATGGGGTGAACATAACCGGTGTTGGAATCTTGAATAGTCTTCACATTGGGACTAAGGAATCTAAGAAGTGGGAGAATGTGGGGATCATGTTGGGCTGGGCTGTGTTCTATAGGATCTTGTTTTACTTGGTGCTTCGATTTGGATCTAAGAACCAGAGGTCCTAG 2223 0.5164 MAPPPPNGYRQETVIDIKNSNKTTRQTVGFTGGLEFFNLTYTVAKKLKVDGKWSSEDVDLLHDITGYAPKGSITAVMGPSGAGKSTFLDGLAGRIKSGSLKGRVSLDGATVSASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGDLSLADKRQRVEKLIEQLGLSTSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPDDVTHHLSRMSRKIPKGENPIEHLIDVIQEYDQCEVGVEALAEFARTGLKPPPLKDGMSTVEPSPSPVRAPHRGGGRQGRGYEEKSLEMSRTSQVSRRVADEYDHSLRSPYNNNSQSWSTSHSAMFLKFTPSRLRNESKPHKNNPAGHGSPGYYAYSSEILAATPTPHSSDYTVNENDYLTPTMATASPEHLAAKFANSFFSEIWILMRRNFINIRRTPELFLSRLMVLTIMGFMMATMFHNPKENLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIAGLITHMPFLLLQASAYAGIVWFALTLRGPFYYFLIVLFVSLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSHDIPVYWRWMNKISTMTYPYEGLLMNEYQTDKSFAVNHGVNITGVGILNSLHIGTKESKKWENVGIMLGWAVFYRILFYLVLRFGSKNQRS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243294g00003 740 Pfam ABC-2 type transporter 471 677 IPR013525 GO:0016020|GO:0140359
Stsc243294g00003 740 SMART AAA_5 70 269 IPR003593 GO:0016887
Stsc243294g00003 740 MobiDBLite consensus disorder prediction 344 366 - -
Stsc243294g00003 740 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Stsc243294g00003 740 Gene3D - 43 283 IPR027417 -
Stsc243294g00003 740 MobiDBLite consensus disorder prediction 317 366 - -
Stsc243294g00003 740 FunFam ABC transporter G family member 6 44 282 - -
Stsc243294g00003 740 CDD ABCG_EPDR 34 266 - -
Stsc243294g00003 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 284 IPR003439 GO:0005524
Stsc243294g00003 740 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 685 695 IPR025660 -
Stsc243294g00003 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 278 IPR027417 -
Stsc243294g00003 740 Pfam ABC transporter 61 212 IPR003439 GO:0005524
Stsc243294g00003 740 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243294g00003 Stsc-Chr243294 5130 8950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243294g00003 33 298 Calmodulin-binding Proteins AT2G36910 26.667 1.07e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243294g00003 K05681 - gmx:100804809 1090.87