Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243226g00001 ATGTCCGACGCTCCGGCGATTCCTTGTGGCAGTGGAAAAGAAGAAGAAGAAAGCTCCGACAGTTTGGAGAAGGATCAATACGTTTACCTTCCGTACAATGGCATAAAGAATGCCATGAAGAGGGTTCTACCGAGGGAAGTGAAAATCTCCGAAGACGCCGAGCTTACCATACAGAAATGCGTCTCTGAGTTCATCAGCTACGTCACCACCAAGGTGTGCGAGAAGAAAAAGAAGGAAGGAAGGAGAGCCACCATTTCTGGCAATGATGTGATTAAGGCGATATCGATCTTGGTTTCGGGCATGATCGTACTAGACCTCTACAGGTTTACCTCAATAAACTCACAGAGACAGAG 353 0.4703 MSDAPAIPCGSGKEEEESSDSLEKDQYVYLPYNGIKNAMKRVLPREVKISEDAELTIQKCVSEFISYVTTKVCEKKKKEGRRATISGNDVIKAISILVSGMIVLDLYRFTSINSQRQ 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243226g00001 117 Gene3D Histone, subunit A 16 112 IPR009072 GO:0046982
Stsc243226g00001 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 97 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc243226g00001 117 MobiDBLite consensus disorder prediction 1 23 - -
Stsc243226g00001 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 94 IPR003958 -
Stsc243226g00001 117 SUPERFAMILY Histone-fold 28 95 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243226g00001 Stsc-Chr243226 2543 3338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243226g00001 1 97 CCAAT-HAP3 Transcription Factor Family AT2G38880 41.237 9.64e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243226g00001 K08065 - gmx:100791435 78.9517