Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243195g00002 ATGTCACAGGCATGTCGCTGGATTTCTGGCGTACAGGAGCCCGCAGCCTGCTTCGTCTTCATCCCCAGGCGCCATCTACGTCCCCAGCCTCCTCCAGAAACTCGTCGCCCAGCAACACCGTACTCCGTCGCCCAGCCTCGTGGAAAAACTCCGCCACTGTCGAAGGTACACCAAACTATCTTCTCCTCATTTTGCTTAGTTATGGGGGACTTTGATTTCACTATAGATGTGCATCATGGTAGAAGATTCATTGACATGGGACATGGTTTAGAGTATTTGGGGGGGTCTGTGTTGGAAGACTTGCACTTTGAGCTTGATTCGTGGTCGTTGCAAGAAATAGTGACCATCGGAAAGACACACCACAAGAACCTTGTTCGCTTGCTGGGATTTTGTGTTGAGGGTCCTAAAAGGCTTCTGGTCTATGAATACATGAGCAATGGTTCCCTTGGGAAGCTTCTCTTTGGAAATGAAATGCTTCCAGATTGGGATGAGAGAGTGAGAATAGCACTGGATATTGCAAGAGGGATCCTCTATCTGCATGAAGAATGTGAGGCTCCTATCATTCACTGTGACATAAAGCCTCAGAATAGCTTGATGGATGAGTTCTGGACTGCCAAAATATCTGATTTCGGGCTAGCAAAGCTTCTTATGCTGGATCAAACAAGAACCTTCACAGGAGTTAGAGGGACAAGAGGGTATGTGGCTCCAGAATGGCAGAAGAACATCCCAATATCAGTGAAGGCAGATGTTTACAGATATGGTGTTATGATGCTGGAAGTTACATGCTGCAGAAGGAACCTTGAAGTTTCTGTACCAGAGGAGATTCTTCTCTCTGGCTGGACCTATAGGTGCTTTGTTGCTAAAGAGTTGCATAAGTTAGTTTATTGGGAAATAGTGGATAAGAATGTTTTGGAAAATATGGTGAAGGTGGCTTTGTGGTGTATCCAAGAAGAGCCTGCTCTCTGCCCAACACTGAAGAGTGTGGTGTTGATGTTAGAAGGGGTTACTGATGTAGCTATCCCTCCATGTCTATCAACCTCTATTTCTATGTAA 1053 0.4587 MSQACRWISGVQEPAACFVFIPRRHLRPQPPPETRRPATPYSVAQPRGKTPPLSKVHQTIFSSFCLVMGDFDFTIDVHHGRRFIDMGHGLEYLGGSVLEDLHFELDSWSLQEIVTIGKTHHKNLVRLLGFCVEGPKRLLVYEYMSNGSLGKLLFGNEMLPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNSLMDEFWTAKISDFGLAKLLMLDQTRTFTGVRGTRGYVAPEWQKNIPISVKADVYRYGVMMLEVTCCRRNLEVSVPEEILLSGWTYRCFVAKELHKLVYWEIVDKNVLENMVKVALWCIQEEPALCPTLKSVVLMLEGVTDVAIPPCLSTSISM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243195g00002 350 Pfam Protein kinase domain 109 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243195g00002 350 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 144 340 - -
Stsc243195g00002 350 ProSiteProfiles Protein kinase domain profile. 60 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243195g00002 350 SUPERFAMILY Protein kinase-like (PK-like) 109 333 IPR011009 -
Stsc243195g00002 350 Gene3D Phosphorylase Kinase; domain 1 100 144 - -
Stsc243195g00002 350 MobiDBLite consensus disorder prediction 28 50 - -
Stsc243195g00002 350 SMART serkin_6 87 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243195g00002 350 Gene3D Transferase(Phosphotransferase) domain 1 145 340 - -
Stsc243195g00002 350 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 111 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243195g00002 Stsc-Chr243195 5612 7024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243195g00002 112 342 Receptor kinase-like Gene Family AT5G20050 37.549 9.22e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc243195g00002 Pkinase 3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243195g00002 - - ahf:114924106 409.453