Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243158g00001 CTCAGTCTTGCCTTCGGCAGCGAACGAAACAAGACAAGGATCATCAAGTGTGGAGCTTTACCAGTTCTGCTAAATCACCTTCACTCTCAAAGCCAGACAGTGGTGCAATTGACAATAGCAGCCATGCTAACCCTCTCATCCTGCAAGGCAAATAAGGTCCCAATTGCTTCATCCGGTGCTGTACAACACTTGGCTGGATTTGTAAATAGCGGCGACATTCAGTTACAGCTTGATGTTGTGGCCACAATACACAACCTCTCAACCTGCAAAGAGATTGTTCCATTGATCGTTGCTTCTGGCATTGTACTTTCCTTGCTCGAACTGGTCCATAGCTCTGTAAAATCATCTCCGTTGGGTGAAAAGGCGATTGGTTTGCTCGAAAATATTGTCTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTGTTGGTGGGGCAATTCGGATACTAGTTGAGACTATTGAAGATGGATCTTGTCTAGGGAAAGAGCATGCAGTTGGTATACTTCTCCTTATATGCCAAAGTTGCAGAGAGAAATACAGAGGAATGATTCTGAGAGAGGGAGTGATGCCAGGACTGCTTCAGCTAAGCATAGATGGAACGCGGAGAGCCAAGAACACGGCTCGAGAATTGTTGTTGCTTCTGAGGGATTGCTCCGATTATAGTTCAAGGCGGAGACAAATGAATCATGAGCTCATAGAACAGATCATGGAAGAAATTGATGCAGATGGAGAGAATTTGGCTGATGCTAAGCTGAGGTTAGTGGAGGAGATGATTGCAAAGCTGAACACATAA 795 0.4528 LSLAFGSERNKTRIIKCGALPVLLNHLHSQSQTVVQLTIAAMLTLSSCKANKVPIASSGAVQHLAGFVNSGDIQLQLDVVATIHNLSTCKEIVPLIVASGIVLSLLELVHSSVKSSPLGEKAIGLLENIVSSSESALCEAASVGGAIRILVETIEDGSCLGKEHAVGILLLICQSCREKYRGMILREGVMPGLLQLSIDGTRRAKNTARELLLLLRDCSDYSSRRRQMNHELIEQIMEEIDADGENLADAKLRLVEEMIAKLNT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243158g00001 264 SMART arm_5 7 47 IPR000225 GO:0005515
Stsc243158g00001 264 SMART arm_5 89 131 IPR000225 GO:0005515
Stsc243158g00001 264 SMART arm_5 48 88 IPR000225 GO:0005515
Stsc243158g00001 264 SUPERFAMILY ARM repeat 3 246 IPR016024 -
Stsc243158g00001 264 FunFam U-box domain-containing protein 4 137 253 - -
Stsc243158g00001 264 Gene3D - 141 247 IPR011989 -
Stsc243158g00001 264 PANTHER U BOX DOMAIN-CONTAINING 1 218 - -
Stsc243158g00001 264 Coils Coil 233 253 - -
Stsc243158g00001 264 Gene3D - 1 140 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243158g00001 Stsc-Chr243158 7610 8956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243158g00001 7 217 U-box Gene Family AT2G23140 31.754 5.54e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243158g00001 - - gmx:100778534 377.867