Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc243142g00002 | ATGTCCGGCGGCGCTGGACCACCGCCACCGCATACCAAGCGGGACGATTCCGGCGCCCCTGCCCGGCCGCCGCTGAAGCGCAACCTTGCATTTGCGTCCATGAAACCGCCGTTCGCTCAGCCGGATGAGTACCATAGCTTCTCCTCTTCCTCCTCCGCTGCTCCTCCTGACTCCGGCAGGAAGGTCGCCGCCGATCAACAGGCTGAAGTCGTTGTTGTTAGATCTCCGCACGTTAAGAGGAAGGGTGGAATGACTAACATTGAAGGAGACTCACAAAAGATTAGTAATGTTCCTGGATCAGCAACGGCAACGAGTAGTCCTTTCAAAACTCCGGTGTCTTCGAAAGGGGGAAGGACACATACTAAGTCGAAGGTTTCCAAAGATGGATCGCAATGTCCTCAGACACCCATCTCCAATTCAGGTTCCCCGTCTCCTCTTACTCCTGCCGGAAGCTGTCGATATGACAGTTCCTTAGGTATGTTGACAAAAAAGTTTGTCAATTTGGTAAAGCATTCAGAAGATGGTAATCTTGACCTAAATCAAGCAGCAGAAACTTTAGAGGTGCAAAAGAGGAGGATATATGACATAACGAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAACGGAATCTTCTATATCTGGCGACATTGATGGTGATATCTCAATGCTTAAGGAAGAAGTTGAGAAACTCTCCTTGGAAGAGCACAGATTAGATGACCGAATAAGAGAAATGCAAGAAAAGCTTAGGAGTTTGAGTGAAGATGAAAACAAGCAGAAGTTCCTTTTTGTGACTGAAGAAGATATTAAGGCTGTACCTTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACCACCCTAGAAGTCCCTGATCCCGAGGAAGCTGTTGACTATCTGCAGAGGAGATATAGGATCATTCTTAGAAGCACTATGGGTCCCATTGACGTTTACCTTATCAGTCAGTTCGAAGAGAAATTTGAAGAGATAAATGGTGCTGAGCCCCCTGTAAACTTCCCCCTTCCTTCAAGTTCAGGGTCCAATGAGCAACCAGTGGCAGAACCAGTTCCTGCTGAGTGCAGTGCAGAAGGACTAGAACCTCAACCTCAGATCCCCTCTCAACCATACTGTGATCTAAACACATCACAAGACTTTGGTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCAGATTACTGGCTTCTATCAGATGCGGATATTAGCATAACAGATATGTGGAGAACAGATTCTAGTGTTGATTGGAATGGGGTGGACATGCTTCATCCAGACTTCGGAAATATCCCTAGGCCTGAAACTCCATCATCCGGGATCCCCGAAACTCCATCCACTGTAACTAATTTTAATCAGAGGTGA | 1425 | 0.4667 | MSGGAGPPPPHTKRDDSGAPARPPLKRNLAFASMKPPFAQPDEYHSFSSSSSAAPPDSGRKVAADQQAEVVVVRSPHVKRKGGMTNIEGDSQKISNVPGSATATSSPFKTPVSSKGGRTHTKSKVSKDGSQCPQTPISNSGSPSPLTPAGSCRYDSSLGMLTKKFVNLVKHSEDGNLDLNQAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGTESSISGDIDGDISMLKEEVEKLSLEEHRLDDRIREMQEKLRSLSEDENKQKFLFVTEEDIKAVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPVNFPLPSSSGSNEQPVAEPVPAECSAEGLEPQPQIPSQPYCDLNTSQDFGGGMMKIVPSDADNDADYWLLSDADISITDMWRTDSSVDWNGVDMLHPDFGNIPRPETPSSGIPETPSTVTNFNQR | 474 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc243142g00002 | 474 | PANTHER | TRANSCRIPTION FACTOR E2F | 92 | 435 | IPR015633 | GO:0000978|GO:0006357 | |
Stsc243142g00002 | 474 | MobiDBLite | consensus disorder prediction | 1 | 150 | - | - | |
Stsc243142g00002 | 474 | FunFam | E2F transcription factor 1 | 147 | 220 | - | - | |
Stsc243142g00002 | 474 | SUPERFAMILY | E2F-DP heterodimerization region | 231 | 335 | IPR037241 | - | |
Stsc243142g00002 | 474 | MobiDBLite | consensus disorder prediction | 354 | 389 | - | - | |
Stsc243142g00002 | 474 | MobiDBLite | consensus disorder prediction | 460 | 474 | - | - | |
Stsc243142g00002 | 474 | MobiDBLite | consensus disorder prediction | 126 | 150 | - | - | |
Stsc243142g00002 | 474 | Gene3D | - | 147 | 220 | IPR036388 | - | |
Stsc243142g00002 | 474 | Gene3D | - | 225 | 335 | - | - | |
Stsc243142g00002 | 474 | MobiDBLite | consensus disorder prediction | 450 | 474 | - | - | |
Stsc243142g00002 | 474 | Pfam | E2F/DP family winged-helix DNA-binding domain | 155 | 218 | IPR003316 | GO:0005667|GO:0006355 | |
Stsc243142g00002 | 474 | SMART | E2F_TDP_2 | 153 | 218 | IPR003316 | GO:0005667|GO:0006355 | |
Stsc243142g00002 | 474 | Coils | Coil | 231 | 265 | - | - | |
Stsc243142g00002 | 474 | Pfam | E2F transcription factor CC-MB domain | 234 | 334 | IPR032198 | GO:0046983 | |
Stsc243142g00002 | 474 | MobiDBLite | consensus disorder prediction | 88 | 119 | - | - | |
Stsc243142g00002 | 474 | SUPERFAMILY | "Winged helix" DNA-binding domain | 153 | 216 | IPR036390 | - | |
Stsc243142g00002 | 474 | CDD | E2F_DD | 234 | 335 | IPR032198 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc243142g00002 | Stsc-Chr243142 | 8484 | 12543 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc243142g00002 | 17 | 474 | E2F-DP Transcription Factor Family | AT2G36010 | 55.063 | 4.93e-156 | 450 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | E2F-DP | Stsc243142g00002 | E2F_CC-MB | 9.3e-34 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc243142g00002 | K06620 | - | gmx:100811762 | 659.833 |