Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243142g00002 ATGTCCGGCGGCGCTGGACCACCGCCACCGCATACCAAGCGGGACGATTCCGGCGCCCCTGCCCGGCCGCCGCTGAAGCGCAACCTTGCATTTGCGTCCATGAAACCGCCGTTCGCTCAGCCGGATGAGTACCATAGCTTCTCCTCTTCCTCCTCCGCTGCTCCTCCTGACTCCGGCAGGAAGGTCGCCGCCGATCAACAGGCTGAAGTCGTTGTTGTTAGATCTCCGCACGTTAAGAGGAAGGGTGGAATGACTAACATTGAAGGAGACTCACAAAAGATTAGTAATGTTCCTGGATCAGCAACGGCAACGAGTAGTCCTTTCAAAACTCCGGTGTCTTCGAAAGGGGGAAGGACACATACTAAGTCGAAGGTTTCCAAAGATGGATCGCAATGTCCTCAGACACCCATCTCCAATTCAGGTTCCCCGTCTCCTCTTACTCCTGCCGGAAGCTGTCGATATGACAGTTCCTTAGGTATGTTGACAAAAAAGTTTGTCAATTTGGTAAAGCATTCAGAAGATGGTAATCTTGACCTAAATCAAGCAGCAGAAACTTTAGAGGTGCAAAAGAGGAGGATATATGACATAACGAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAACGGAATCTTCTATATCTGGCGACATTGATGGTGATATCTCAATGCTTAAGGAAGAAGTTGAGAAACTCTCCTTGGAAGAGCACAGATTAGATGACCGAATAAGAGAAATGCAAGAAAAGCTTAGGAGTTTGAGTGAAGATGAAAACAAGCAGAAGTTCCTTTTTGTGACTGAAGAAGATATTAAGGCTGTACCTTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACCACCCTAGAAGTCCCTGATCCCGAGGAAGCTGTTGACTATCTGCAGAGGAGATATAGGATCATTCTTAGAAGCACTATGGGTCCCATTGACGTTTACCTTATCAGTCAGTTCGAAGAGAAATTTGAAGAGATAAATGGTGCTGAGCCCCCTGTAAACTTCCCCCTTCCTTCAAGTTCAGGGTCCAATGAGCAACCAGTGGCAGAACCAGTTCCTGCTGAGTGCAGTGCAGAAGGACTAGAACCTCAACCTCAGATCCCCTCTCAACCATACTGTGATCTAAACACATCACAAGACTTTGGTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCAGATTACTGGCTTCTATCAGATGCGGATATTAGCATAACAGATATGTGGAGAACAGATTCTAGTGTTGATTGGAATGGGGTGGACATGCTTCATCCAGACTTCGGAAATATCCCTAGGCCTGAAACTCCATCATCCGGGATCCCCGAAACTCCATCCACTGTAACTAATTTTAATCAGAGGTGA 1425 0.4667 MSGGAGPPPPHTKRDDSGAPARPPLKRNLAFASMKPPFAQPDEYHSFSSSSSAAPPDSGRKVAADQQAEVVVVRSPHVKRKGGMTNIEGDSQKISNVPGSATATSSPFKTPVSSKGGRTHTKSKVSKDGSQCPQTPISNSGSPSPLTPAGSCRYDSSLGMLTKKFVNLVKHSEDGNLDLNQAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGTESSISGDIDGDISMLKEEVEKLSLEEHRLDDRIREMQEKLRSLSEDENKQKFLFVTEEDIKAVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPVNFPLPSSSGSNEQPVAEPVPAECSAEGLEPQPQIPSQPYCDLNTSQDFGGGMMKIVPSDADNDADYWLLSDADISITDMWRTDSSVDWNGVDMLHPDFGNIPRPETPSSGIPETPSTVTNFNQR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243142g00002 474 PANTHER TRANSCRIPTION FACTOR E2F 92 435 IPR015633 GO:0000978|GO:0006357
Stsc243142g00002 474 MobiDBLite consensus disorder prediction 1 150 - -
Stsc243142g00002 474 FunFam E2F transcription factor 1 147 220 - -
Stsc243142g00002 474 SUPERFAMILY E2F-DP heterodimerization region 231 335 IPR037241 -
Stsc243142g00002 474 MobiDBLite consensus disorder prediction 354 389 - -
Stsc243142g00002 474 MobiDBLite consensus disorder prediction 460 474 - -
Stsc243142g00002 474 MobiDBLite consensus disorder prediction 126 150 - -
Stsc243142g00002 474 Gene3D - 147 220 IPR036388 -
Stsc243142g00002 474 Gene3D - 225 335 - -
Stsc243142g00002 474 MobiDBLite consensus disorder prediction 450 474 - -
Stsc243142g00002 474 Pfam E2F/DP family winged-helix DNA-binding domain 155 218 IPR003316 GO:0005667|GO:0006355
Stsc243142g00002 474 SMART E2F_TDP_2 153 218 IPR003316 GO:0005667|GO:0006355
Stsc243142g00002 474 Coils Coil 231 265 - -
Stsc243142g00002 474 Pfam E2F transcription factor CC-MB domain 234 334 IPR032198 GO:0046983
Stsc243142g00002 474 MobiDBLite consensus disorder prediction 88 119 - -
Stsc243142g00002 474 SUPERFAMILY "Winged helix" DNA-binding domain 153 216 IPR036390 -
Stsc243142g00002 474 CDD E2F_DD 234 335 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243142g00002 Stsc-Chr243142 8484 12543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243142g00002 17 474 E2F-DP Transcription Factor Family AT2G36010 55.063 4.93e-156 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc243142g00002 E2F_CC-MB 9.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243142g00002 K06620 - gmx:100811762 659.833