Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243132g00001 ATGGACTTGGACAGCATTGAGTGTGTGTCATCTTCTGATGGCATGGATGAAGATGAGATCCAACACCATAGCCTTCATCCTCATCATCACTCTGAGTTTTCTTCTTCGAAGCCTCGCAATGGAGGCGCCAACAACAACAACAACAACAATGTTATGGGCGCAGCAACGGCCATTATTCCTCCTGCTACCAGCGTCCATGAGTTGCTTGAATGTCCCGTATGCACCAATTCAATGTATCCCCCAATTCATCAGTGCCACAATGGGCATACATTATGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAGAAGGTGGCTGAATCGCTCGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCAGAAATATTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTCAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTAGGGGACATTCCTTTCCTTGTTGCACATCTGAGGGATGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCACCGCTATGTAAAATCAAATCCCCGTGAAGTTGAGAATGCAACTTGGATGCTTACCGTATTTCATTGTTTTGGCCAATACTTTTGTCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCCCCGGTTTACATGGCATTCCTTCGTTTCATGGGGGACGAGAATGAGGCTCGGAACTATAGCTATAGCCTCGAGGTCGGAGCAAATGGCAGGAAACTCATTTGGGAGGGTACTCCACGAAGTATCCGGGATAGCCACCGGAAAGTCAGGGATAGCCATGACGGTCTCATCATTCAGCGAAATATGGCCTTATTTTTCTCTGGTGGAGATAGGAAGGAACTGAAACTAAGAGTGACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGAGTGTGCATACCAAATCTTTGTAGCTGA 1002 0.4621 MDLDSIECVSSSDGMDEDEIQHHSLHPHHHSEFSSSKPRNGGANNNNNNNVMGAATAIIPPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243132g00001 333 ProSiteProfiles Zinc finger RING-type profile. 71 107 IPR001841 -
Stsc243132g00001 333 FunFam E3 ubiquitin-protein ligase SINAT3 123 179 - -
Stsc243132g00001 333 SUPERFAMILY RING/U-box 63 113 - -
Stsc243132g00001 333 CDD Sina 185 313 - -
Stsc243132g00001 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 312 IPR008974 GO:0005515
Stsc243132g00001 333 MobiDBLite consensus disorder prediction 24 49 - -
Stsc243132g00001 333 CDD RING-HC_SIAHs 69 107 - -
Stsc243132g00001 333 FunFam E3 ubiquitin-protein ligase SINAT3 11 122 - -
Stsc243132g00001 333 ProSiteProfiles Zinc finger SIAH-type profile. 124 184 IPR013010 GO:0008270
Stsc243132g00001 333 Pfam Seven in absentia protein family 113 312 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc243132g00001 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 123 IPR013083 -
Stsc243132g00001 333 SUPERFAMILY TRAF domain-like 124 316 - -
Stsc243132g00001 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 177 IPR013083 -
Stsc243132g00001 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 46 318 - -
Stsc243132g00001 333 FunFam E3 ubiquitin-protein ligase SINAT5-like 180 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243132g00001 Stsc-Chr243132 2659 7684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243132g00001 62 319 C3H Transcription Factor Family AT2G41980 81.395 7.40e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243132g00001 K04506 - qsa:O6P43_015002 646.736