Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243114g00001 ATGGGAACTTTCTTGTTCCAGAACCAAGTTTCTCATCACGAAGGTGAAGACGACGATGAGTACCTTATCCTTGCTGCAGCAGAGATCAAAGGATCATCATCATCATCATCAGCCACACAAACCAGCTGCTTCACTTCTCTGACCGAATCCGTTATCAGGAAGCTTCAAACCGCTGAAATCAACACGGTATCATCTGTTCTTCTCATACCATTCTCAGATGCTTGCCTTTTGTTAATCCACCATGGCTGGAGCGCCATGAAGGTCCACGAAGCTTGGTTCGAAGACGAGCAAAGAGTTCGAGAGCTTGTTGGCATCAACTACTCTGAAGAATTAATCCAGAGTGCTACTTGCGAGATCTGCTTTGATGATTCAGTTTGGTACAAGAAAGTGGAGTATGCCAGGTGTGGCCACGGTTACTGTGTTGATTGCTGGAAACGCTACATAGATGAGAAGATTCTAGAAGGTCCTTATGAGTTTCTCAAACTGATGAGATGCCCTCATCCATCTTGCGAGGCTTCTTTGGAGATTGATATGATTAGGAGATTTGCAAGTGAGGCTAACAAGAATATGTACGATGGTTTCTTGTTAAACTCTTCTGTGGAAACCAGAAAGAATATAAAGTGGTGTCCGAGTCCTGGTTGTGATCTTGCTGTTCTTTATGAATCTGATGGAAACCACGCTAACAAAAATGTTGAAGCAAGTTGCTGTAATGGCCATAGGTTCTGCTGGAGATGCGGTGAAGAAGTTCATAGACCTGCGAGCTGTGAAACTGTGGCTGAATGGAAGAAGAAGAACCATGAAAATTTTCAGAGCTTGACTTGGATCTCCGCTTTCACCAAGAAATGCCCTTCTTGTGGGGTCCACATTGAGAAGAGTGGTGGTTGCATGAGCATGAGATGCACTGTTTGCCGCTGCCAATTTTGCTGGCGGTGTCTTTCTGCTTGGCCTCTGTGTTCTGCCTATGGTTGTCACCGTTTCCATGCCCATCATACTGAAAGGTCCACAATGAACAATGCAAATACATCTTTGGACTTGCCGAGGTACACTCACTATTATGAAAGTTGGTTTACCAACGAATTCTCAAGGAAAAAATGCACTGAGGTCATGGAAAAGTACCTGAATGATGAGAGTATAAGAATGATGTGCAACGAATTTGAAAGGGATGAAGAAGATTTTGATTTTCTGAAGAAGGCATGGGAAGAGGTTATGAGGTGCAGGAACCTACTGAAGTGGACTTACGCATATGGTTACTTCATTCCTGCGGATGAGAAAGCTAAGAAGGAGTTGTTCGAACACACACAAGGCGTGGCTGAGAATGCATTGGAGACACTTCACAAGTTTGCTGAAACAATGCTGTTGGAAATCCTGAACAAGAAGAAAGACGGGTTCGATAGGAATAGTCTGGAATTGTCTGATCTGACTAAAGTGACCCAGAATTTCTTTGACAACATGGTGACTCAGTTGGAGGATAGAGGGCTTGATGATGTGAATGTGAAGAGTTATGCTGAAACCTCCTCATCCTCATCCTCATCTTCATCGTCGTCTTCATCTCCTGGAGGTGTTGTGATGAGGGATGGAATGACAGAGATTGGCCTCAAGAGATGCAGTTCTTGCGGTTGCTACAGTCTTCTGAACACTCCAAAGTGTGGCTGTGTTCATAATAATGAAGAATTTGAACACGTTGTTGTGCGGAGGATACTCCGTCCTCGGTTTAATCCGAAAGATGTTCCCCCCGAACTTGTGTGGGAGCTATGA 1755 0.4427 MGTFLFQNQVSHHEGEDDDEYLILAAAEIKGSSSSSSATQTSCFTSLTESVIRKLQTAEINTVSSVLLIPFSDACLLLIHHGWSAMKVHEAWFEDEQRVRELVGINYSEELIQSATCEICFDDSVWYKKVEYARCGHGYCVDCWKRYIDEKILEGPYEFLKLMRCPHPSCEASLEIDMIRRFASEANKNMYDGFLLNSSVETRKNIKWCPSPGCDLAVLYESDGNHANKNVEASCCNGHRFCWRCGEEVHRPASCETVAEWKKKNHENFQSLTWISAFTKKCPSCGVHIEKSGGCMSMRCTVCRCQFCWRCLSAWPLCSAYGCHRFHAHHTERSTMNNANTSLDLPRYTHYYESWFTNEFSRKKCTEVMEKYLNDESIRMMCNEFERDEEDFDFLKKAWEEVMRCRNLLKWTYAYGYFIPADEKAKKELFEHTQGVAENALETLHKFAETMLLEILNKKKDGFDRNSLELSDLTKVTQNFFDNMVTQLEDRGLDDVNVKSYAETSSSSSSSSSSSSSPGGVVMRDGMTEIGLKRCSSCGCYSLLNTPKCGCVHNNEEFEHVVVRRILRPRFNPKDVPPELVWEL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243114g00001 584 CDD BRcat_RBR_ANKIB1 196 264 - -
Stsc243114g00001 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Stsc243114g00001 584 MobiDBLite consensus disorder prediction 503 521 - -
Stsc243114g00001 584 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 53 412 IPR031127 GO:0004842|GO:0016567
Stsc243114g00001 584 FunFam RBR-type E3 ubiquitin transferase 112 200 - -
Stsc243114g00001 584 SMART ibrneu5 189 255 IPR002867 GO:0008270
Stsc243114g00001 584 SMART ibrneu5 264 318 IPR002867 GO:0008270
Stsc243114g00001 584 SUPERFAMILY RING/U-box 274 319 - -
Stsc243114g00001 584 SUPERFAMILY RING/U-box 191 262 - -
Stsc243114g00001 584 Gene3D - 251 494 - -
Stsc243114g00001 584 ProSiteProfiles Zinc finger RING-type profile. 117 166 IPR001841 -
Stsc243114g00001 584 MobiDBLite consensus disorder prediction 503 523 - -
Stsc243114g00001 584 Pfam IBR domain, a half RING-finger domain 272 315 IPR002867 GO:0008270
Stsc243114g00001 584 Pfam IBR domain, a half RING-finger domain 190 255 IPR002867 GO:0008270
Stsc243114g00001 584 ProSiteProfiles TRIAD supradomain profile. 113 327 IPR044066 -
Stsc243114g00001 584 SUPERFAMILY RING/U-box 115 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243114g00001 Stsc-Chr243114 4403 6509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243114g00001 2 509 ARIADNE family AT1G65430 37.996 2.13e-107 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243114g00001 K11968 - aip:107632220 858.596