Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243113g00001 ACAAAATGCAAGCGTGCTGAGGTTGCATTGTCACTTCTGAGAGAGAACAAGAATGGATTTGACATTGTTATAAGTGATGTGCATATGCCTGACATGGATGAATTTAAGCTTTTAGATAATATTGCGTTGAAGATGGACCTTCCAGTTATTATAATGTCCGCAGACGATGGAAAGCATGTTATAATGAAGGGCCATGTGGTTCGGAAGAGAAAGACCGGTTGGAGAGATCCAGAGCAATCAGGCAGCATAGATGAAAGAGATCGGCAGCAAAAGGTATCTGATGATGCGGATTACTCATCGTCTGCAAATGAAGGGAAATGCTCTAAGAAGAGAAGGGATGAAGAAGAAGATGCAGATGAGAGGGATGATAGTTCGACTTTGAAGAAGCCACGGGTGGTTTGGTCTGTTGAGCTCCATCAACAGTTTACAGCCTAG 435 0.4299 TKCKRAEVALSLLRENKNGFDIVISDVHMPDMDEFKLLDNIALKMDLPVIIMSADDGKHVIMKGHVVRKRKTGWRDPEQSGSIDERDRQQKVSDDADYSSSANEGKCSKKRRDEEEDADERDDSSTLKKPRVVWSVELHQQFTA 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243113g00001 144 MobiDBLite consensus disorder prediction 104 128 - -
Stsc243113g00001 144 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 143 IPR045279 GO:0009736
Stsc243113g00001 144 Gene3D - 1 71 - -
Stsc243113g00001 144 ProSiteProfiles Response regulatory domain profile. 1 84 IPR001789 GO:0000160
Stsc243113g00001 144 Pfam Response regulator receiver domain 4 63 IPR001789 GO:0000160
Stsc243113g00001 144 MobiDBLite consensus disorder prediction 66 129 - -
Stsc243113g00001 144 MobiDBLite consensus disorder prediction 71 94 - -
Stsc243113g00001 144 SUPERFAMILY CheY-like 5 63 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243113g00001 Stsc-Chr243113 8394 8971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243113g00001 1 144 Response Regulator Gene Family AT4G16110 57.062 3.04e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc243113g00001 Response_reg 1.7e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243113g00001 - K14491 cave:132175434 214.927