Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243089g00002 GAAGGAGCGCAGGTAAGTGAGGAAGATAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTTCCTTCTGATTCTGGATCAGAAGAGAAAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGTGATGGTTTTTTCAACAACTTTCCTCTTCAGCCACCTTCACAATCTGAAATCCAAAAGCAAGAACAAGAACCTTCACCAAATCCCCAAATTGCTGCTTGTCACTCCATTATTCAGCTCCAAGACCAAGGCAACAACAACAATGTGAGAAAACGACACTATAGAGGAGTTAGGCAGAGACCGTGGGGAAAATGGGCAGCCGAAATCCGAGACCCTAAAAAAGCCGCTAGAGTTTGGTTAGGCACCTTCGATACTGCTGAAGCTGCTGCTGCTGCTTACGATTCTGCTGCTTTAAAATTCAAAGGTAACAAAGCCAAGCTCAATTTTCCTGAGCGAGTTTCCGCCGCATCTTCATCACTACTACCACCTCCACCACCACAGCCACCGGCTGCTATTACTGCTACGGTGTATCGACCTCCTTCAGCACCTTATACTCCATTAATGGCTTCATCGGAGGAAGCAGGAGGGTTTCCAAACCTAATGCAGTATGCGCAGTTGCTTTGCAGTAGGGATGATGATGATCTACAACGTGTAACTTCAGGGCTTTACAATAACAATTTTTCATCTTATGGTTCTGATGTGATGATGAATAATTCATCATCATCGTCAGGGTTGTTGTCTTCTTCTTCTTCAGATTCTAGATCTGCGGTTGTGAGTGATCAAGTCCATAGCATGATGGGTGCATCATCAGCTGCACCACTAATGGGAGATTATAATTATTATGATTATTCTTATTTTGATCATCAAGGGACTGGTTTTGATGGCAGGAATTCATGA 897 0.4404 EGAQVSEEDKVDRRHGKRPLPSDSGSEEKRREEEEEEEEGGDGFFNNFPLQPPSQSEIQKQEQEPSPNPQIAACHSIIQLQDQGNNNNVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDSAALKFKGNKAKLNFPERVSAASSSLLPPPPPQPPAAITATVYRPPSAPYTPLMASSEEAGGFPNLMQYAQLLCSRDDDDLQRVTSGLYNNNFSSYGSDVMMNNSSSSSGLLSSSSSDSRSAVVSDQVHSMMGASSAAPLMGDYNYYDYSYFDHQGTGFDGRNS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243089g00002 298 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Stsc243089g00002 298 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Stsc243089g00002 298 PANTHER DNA-BINDING DOMAIN 38 239 IPR044808 GO:0003700|GO:0009873
Stsc243089g00002 298 MobiDBLite consensus disorder prediction 1 69 - -
Stsc243089g00002 298 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Stsc243089g00002 298 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Stsc243089g00002 298 MobiDBLite consensus disorder prediction 1 29 - -
Stsc243089g00002 298 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Stsc243089g00002 298 MobiDBLite consensus disorder prediction 48 69 - -
Stsc243089g00002 298 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Stsc243089g00002 298 FunFam Ethylene-responsive transcription factor 2 92 151 - -
Stsc243089g00002 298 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Stsc243089g00002 298 CDD AP2 93 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243089g00002 Stsc-Chr243089 5832 8098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243089g00002 67 159 AP2-EREBP Transcription Factor Family AT5G61890 74.194 2.55e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc243089g00002 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243089g00002 - - aip:107647314 313.538