Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243081g00002 ATGCTTAGCGGTGATAGATTAGGATTTAGAGATTTTGCTGATGACCAAAGTACATCAAGATCTAGATATAGATCAGATGGTGCATCAACTTCACAAGCTTGTAGGATACGAAGAAGTGTCAGTGTTACTCCTGAGATTGGTGATGATATCGTAAGGGCTGTGCGAGCAATGAATAAAGCACTTAGGCAAACTCGTCTTCTAAGAGAACATGAGAATCAGAGTTCTTTGTCCAATTCTCTGAATGATAGAACTAGTGTTGCAGATCTTCACAGAAATGTGTCAAATTTTCATTGTCATAGTGATAGTTCTCAAAAAGCAATGTCATTACCCTCTTCACCACATGATTATAGAGGACAAGCATCTGAGAGAGGTGGGCTATCTGGATATGGAGTGAACCCTAAACTGGAGCTGACTTGGAATAAAGTTATTGAATTACAAATGTTCGACAATAAACCTCTGTTACCATTTGAAGAATGGAATATTGACTTCTCAGAATTAACAGTCGGAACCCGTGTTGGAATTGGGTTCTTTGGGGAAGTTTTCCGTGGCATGTGGAATGGCACAAATGTTGCAATCAAGGTTTTTCTTGAGCAAGATTTAACTGTTGAAAACATGGAAGATTTCTGCAATGAGATAAGCATTCTCAGCCGGCTGCGACATCCTAATGTTATTTTGTTTCTTGGTGCATGCACAAAGCCTCCACGCTTGTCGATGGTTACAGAATATATGGAAGTGGGATCTTTGTATTTTTTGCTTCATGCGAGTGACCAAAAAAAGAGGCTTAATTGGAATAAAAGATTAAAGATGTTGCATGGCATATGCCGGGGCTTGATGCACATTCATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCAAATTGCCTTGTGGATAAGCATTGGACAGTGAAAATCTGTGACTTTGGACTCTCTAGAATAGTGACTGAGACTCCCATGAGAGATTCTTCGTCAGCAGGAACACCAGAGTGGATGGCTCCGGAACTCATTCGAAATGAACCATTTACTGAAAAATGTGACATCTTTAGCCTTGGAGTTATAATGTGGGAGCTTTGTACCTTGAGTAGGCCATGGGAAGGTGTACCTCCAGAAAGAGTGGTTTACGCGGTAGCTAATGAAGGTTCCAGATTGAAAATTCCTGAAGGCCCAATGGGCAGACTGATATCAGATTGTTGGGTAGAACCACATGAGCGACCAAGTTGCGAGGAGATCCTTTCTCGTTTGGTAGACATTGAGTACACAACGTCTTGA 1269 0.4106 MLSGDRLGFRDFADDQSTSRSRYRSDGASTSQACRIRRSVSVTPEIGDDIVRAVRAMNKALRQTRLLREHENQSSLSNSLNDRTSVADLHRNVSNFHCHSDSSQKAMSLPSSPHDYRGQASERGGLSGYGVNPKLELTWNKVIELQMFDNKPLLPFEEWNIDFSELTVGTRVGIGFFGEVFRGMWNGTNVAIKVFLEQDLTVENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEVGSLYFLLHASDQKKRLNWNKRLKMLHGICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIVTETPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVVYAVANEGSRLKIPEGPMGRLISDCWVEPHERPSCEEILSRLVDIEYTTS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243081g00002 422 SUPERFAMILY Protein kinase-like (PK-like) 140 414 IPR011009 -
Stsc243081g00002 422 Gene3D Phosphorylase Kinase; domain 1 159 244 - -
Stsc243081g00002 422 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 59 414 - -
Stsc243081g00002 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Stsc243081g00002 422 MobiDBLite consensus disorder prediction 98 123 - -
Stsc243081g00002 422 CDD STKc_MAP3K-like 172 414 - -
Stsc243081g00002 422 MobiDBLite consensus disorder prediction 1 32 - -
Stsc243081g00002 422 FunFam Serine/threonine-protein kinase isoform 1 157 244 - -
Stsc243081g00002 422 Gene3D Transferase(Phosphotransferase) domain 1 245 422 - -
Stsc243081g00002 422 ProSiteProfiles Protein kinase domain profile. 166 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243081g00002 422 SMART serkin_6 166 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243081g00002 422 Pfam Protein tyrosine and serine/threonine kinase 167 414 IPR001245 GO:0004672|GO:0006468
Stsc243081g00002 422 ProSitePatterns Protein kinases ATP-binding region signature. 172 193 IPR017441 GO:0005524
Stsc243081g00002 422 PRINTS Tyrosine kinase catalytic domain signature 279 297 IPR001245 GO:0004672|GO:0006468
Stsc243081g00002 422 PRINTS Tyrosine kinase catalytic domain signature 240 253 IPR001245 GO:0004672|GO:0006468
Stsc243081g00002 422 PRINTS Tyrosine kinase catalytic domain signature 326 336 IPR001245 GO:0004672|GO:0006468
Stsc243081g00002 422 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243081g00002 Stsc-Chr243081 6847 13426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243081g00002 1 420 MAP Kinase Kinase Kinase AT3G58640 68.807 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Stsc243081g00002 PK_Tyr_Ser-Thr 7.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243081g00002 - - gmx:100806527 706.442