Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243077g00001 ATGATGAAAAAGGAAGAAGATCATCATCATCATCATCAACAAGGGCAGTGTTCTCCGCAAACAATCCACAACACCATTCAAAGCTTCCAAGAACAGTTATTCCTTCAGCAGCAGATGCAGCAGCATCACAACCCAAATGGTACTGAAATCTACGTAGGAGGAGGCAGTGACGGCGGCGGTGGCGGCGGAAGCGGAAGTGGAAGAGGGTTAATGTTCCCTCCTGAAGCCTCTCCAATCATGCAACCACCATGGTCTATCCCACCGGTTCACCCTTTCAACCAAGCCGGTCCGGTTCACCCGGTACCCGGCCATCATAATAATAATAACAATAACAATCTCAGCCACGATCCTTTCCTTGTTCCTCCGCCGCCTCCGTCGCCGTACGCAAGTTTCTTCAACAGAAGGGTTCCCTCTCTGCAGTTCGCATACGAGGGGCCTTCTTCTGAACACCTCAGGATCATATCTGATACGCTTGTTGGGCCCATGGTTCATCAGCCCGGTTCTGTGGGCCCATTTGGGCTCCAGGCCGAGCTTGGCAAGATGACTGCCCAAGAAATCATGGAGGCTAAGGCTCTTGCGGCCTCCAAGAGTCACAGCGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCACCTTGCCAAGCTCCGCAGCTTGTTGCCAAACACAACTAAAACAGATAAAGCTTCATTGCTAGCAGAAGTGATTCAACACGTGAAGGAACTGAAGCGTCAAACATCACTGATAGCAGAAACGAATCCAGTTCCCACAGAATCCGACGAGTTAACGGTGGATACGACGGACGAAGACGGAAGGTTTGTGATCAAAGCTTCTTTGTGTTGTGAAGACAGGTCCGATCTCTTACCGGACCTCATCAAGACACTGAAGGCATTGAGGCTGAGAACCCTCAAAGCCGAGATCACCACGCTCGGCGGCCGCATGAAGAATGTGTTGTTCATCACCGGGGAAGAAGAAGATTCTAGTAGCAACGGCAGCAATGGTGGGGGAGAGCAAAGTCTTCAGCTGGGGCAGTATTGTATTAGCTCAATACAAGAAGCACTTAGGGCAGTCATGGAGAAAGGTGGCGGTGATGAATCTGCTTCTGGGAATGTTAAGAGGCAAAGGACAAATATCAATATCCTTGAACAAAGGTCTTTATGA 1161 0.4978 MMKKEEDHHHHHQQGQCSPQTIHNTIQSFQEQLFLQQQMQQHHNPNGTEIYVGGGSDGGGGGGSGSGRGLMFPPEASPIMQPPWSIPPVHPFNQAGPVHPVPGHHNNNNNNNLSHDPFLVPPPPPSPYASFFNRRVPSLQFAYEGPSSEHLRIISDTLVGPMVHQPGSVGPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETNPVPTESDELTVDTTDEDGRFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRMKNVLFITGEEEDSSSNGSNGGGEQSLQLGQYCISSIQEALRAVMEKGGGDESASGNVKRQRTNINILEQRSL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243077g00001 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Stsc243077g00001 386 CDD bHLH_AtAIG1_like 188 265 - -
Stsc243077g00001 386 Gene3D - 188 249 IPR036638 GO:0046983
Stsc243077g00001 386 FunFam transcription factor bHLH30 188 251 - -
Stsc243077g00001 386 SMART finulus 199 248 IPR011598 GO:0046983
Stsc243077g00001 386 MobiDBLite consensus disorder prediction 37 121 - -
Stsc243077g00001 386 PANTHER TRANSCRIPTION FACTOR BHLH30 30 378 IPR045847 GO:0003700|GO:0006355
Stsc243077g00001 386 Pfam Helix-loop-helix DNA-binding domain 196 242 IPR011598 GO:0046983
Stsc243077g00001 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 251 IPR036638 GO:0046983
Stsc243077g00001 386 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243077g00001 Stsc-Chr243077 4122 8210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243077g00001 24 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.699 2.04e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc243077g00001 HLH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243077g00001 - - cave:132184452 414.461