Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243072g00001 ATGACTGTTGCTTGTGTTAGTTTTAACAAGAAGTCTAATAATGCACAAGTTGGGCAATCAAGGGTAACCCCTACTCCGGCAACCGAGTCTAATAGTACTTATGCAACCAGGACTGTACCAAATGGTAGCCATGTACAACCTCAGTTTCATGGAGGATCTGATGCACCAGTTACCCATACGAATGTCAAGTCAACAGAATCCTCAAATTCTCAGAGGACAGCCAGAGCTGTGCCAAAAGCTCCTACTTCTCAACCTCCCACCTTGAGTTCTGATTCAGCTGCTTCGACAACCCCTGCTAAGGGAGATGCATCCAAGGCATTTCCTTTCCAATTTGGATCCATTAGTCCGGGTTTTGTGAATGGAATGTCTATTCCTGCTCGCACAAGCTCAGCTCCACCCAATTTAGATGAGCAGAAGCATGCTCAGGCGCGCCATGATTCTTTTAAACCTGCTCCAGCACCAGCACCAGCACCTCCTGTTCCAAGGCAGCACCCCGTGAAGAAGGATACAGGTATTACGGATCAAACTCATGCTGGGATGAGGGCAAAAAATGATATACAGGTGTCAGCATTACCTCCAGGAAACCAGATGCAGAAGCCTTCTGTTGTTCCTTTAAGTGGAATTTCGATGCCAATGGCATATCATCAGCCCCAGGCATCTGTACAATTTGGCAGTCCCAATCCACAGATTCAATCTCAGGGTATGTCAACTGCATCTCTTCAGATGCCTTTACCAATGCCTTTGCCAATTGGAAATGCTCCACAAGTGCAGCAACAGGTCTTTGTTGCAGGCCTTCAACCTCATCAGATGCATCGAGGGCTCATGCATCAAGGCCAAAACATGAGTTTTACTCCACAAATGGGCCCTCAATTGCCCCACCAGTTAGGTAGCATGGGTATTAGCATTGGCCCACAATATTCCCCTCAGCAAGGAGGAAAATTTGCTCCTCGTAAAACTACTCCTGTCAAGATAACTCATCCCGAGACCCATGAGGAGCTTAGGCTTGATAAAAGAGCAGACACATCAGATGGTGGGTCATCTGGTGCTAAGTCTCACTCTAGTGTGTCTTCTCAGTCTCAACCTGCATTTCCATCTATTAATTACTATCCGTCCAATTCCTACGGTGCCCATTCTCCCTTTTATCAACCCTCTAGTAGTAATCAGATAACTCCAACTTCTCAGCCACAGAGATTTAATTATGCGGTGAGCCAGGGTCCACAAAATGTTAGTTTCATGAATTCATCTTCTCAAAGTTCACTACCTGCTAATAAAGTTGTCAATCATATTCCTGGCATTGTTGAACCATCAAATCCAAAATTTTTCCGGGATGTGCATAATGCTATCCCTGCATCATCAACTGGAGCAACTTCGGTGTCTGTTAAACTTAGTAGTGGGTCTGGTGTTGTGGACTTGTCAGTTGCCAATTCCAATATTTCTGGTGCCCAAAAGACCCAAAAGAGTGACTCTGCAAGATCTTCAGTAGTATCTAGTAATGCTAGCTCCTCTTTGCCACAAAAAGGTGCTGAAACTTTCTCTGAAGTTTCTTTGGAACAGTCTAACTTATCCAGTGATTCTTCAGTTTTGAGCTCATTGCCAAAACAATCAACTGCATATACTAAGGTCACAGCTGCTCCCATGAAGCATTCATCTGCTGTGAATGAGGAGGCTGTTTCAGTTGTGTCTAATAATGATGAAAAGGGGAAGGTATGTCTCAGTAGGCCAAATTCTTCGAAAGATAATAATAAGGTACAGAAGGAAGGCCAACTACAACACCCGGTTGCTGTACAGTCTCCTACTGTGGCAAATGTGCCCTCCCAAGATGTTGAGAGATCTACTGGGGGTTCTGAAACTGTAGGAACAAAAACAACCCATTCTGCAGCTGTCACCAGTGAAGATGTCACAGAAACGACTGAAGATACATTATCTACTCCCTCTTTGACCATGCCTTATTCTGAAGCAAAAAGCAATGGTGCTGCAGAACTTTCTTCTTGTGTTTCAGCTGACGGACCTGTTGCTCAAGCTGTGGATAGTTTGAAAACGAATGATGAGCTTGATGAATTTTCACAACCGGATAAACTGTCAAAGAATAAAGATTCAGAAATGGGTGAAAAAACTGAAATTTCATCTATTCAAGGATGTAAACGAGAGCTGGATGAACCTACAAGCTGTCCTCCGGAATGTGTAAACCAAAGCTCTACTGCTTTGGGTTCTACTACAGATGTTTATTTGAGTAGAGATGATATTGCAGTTGGTAGTGAAGCTGTTTCTGCAAGTTCTGGCACATTAGACCAGTCTTCTGATATTCTAGAGGCAACATCAGAACATCGTGATGATGGTTTAGAGAATGGTGGCAGTGGTGTAGTTTCTCTTCCAGCACCAGATACTAATGATAGACCAATTCTAGACCAAAATAAGGTGAAAACTACATCTAAGGGGAAAAAGAAAAGAAAAGAGATTCTTCAGAAAGCAGATGCTGCTGGGTCAACCTCTGATCTTTATAATGCATACAAGGGACCTGAAGAAAAGAAGGATGCTGTTGTTAGCTCAGACGAAGTGGAAAGTGTTTCTATTTCTGCAAGTTTGGAGCAGTTGTCTACTAATGCTGCTCAGCCAGATGCTTTAGCAGGTGAGCAATGCAGACAGAGTAAGACTGAACTTGATGATTGGGAGGATGCAGCTGACATGTCTGCACCAAAGCTTGAAGTTTCAGATCAAACTGATCAGGTTATTGATGGAAGTGTAGTCACAGTGAAAAGATACTCTCGAGATTTCCTTTTGAAGTTTGCAGAGCAGTGCACTGACCTTCCTGCAGGTTTTGAAATCACAGCAGACATTGCAGAGGCTTTGATGAGTGCCAATATTAGTAGTTCACGTGATCCTCAACCTTCTCCTGGAAGGATTATAGATAGGCCTAGTGGGATGTCTCGAATGGATCGCCGCAGTGGTGGTATTACTGAGGACGACAAATGGAGTAAAGTTTCCAATGTTTTTCACACTGGTATGCGTTTGGATAGTATTGGAGGTAATGCAGGATTTTATCCAGTTCAAGGAGGCAATTTTGGTGTATTAAGGAATCCTCGCTCGCCTCTGCCATATGCTGGGGCTGGAGGGATTCTTTCTGGGCCAATGCAATCCATGGGAAATCTGGGTGGAATGCCAAGAAACAGCTCTGACAGTGAAAGGTGGCAGCGTGCTTCTAGCTTCCAGCAAAGAGTCTTGGCTCCTTCTACTCCTCAAAGTCCTTTGCAGATGATGCACAAAGCTGATAAGAAGTACGAGGTTGGTAAAGTGACAGATGTGGAAGAGGCCAAGCAGAGGCAACTGAAAGCTATATTAAATAAGTTAACTCCTCAGAATTTTGAGAAGCTTTTTGAGCAGGTAAAAGCAGTTAACATTGACAATGCAGTAACTCTCACTGGTGTCATCTCACAAATATTTGAGAAGGCTTTGATGGAGCCTACCTTCTGTGAAATGTATGCCAATTTCTGTTCACATCTGGCAGCTGAGTTGCCTGATTTTAGCGAAGACAATGAGAAGATAACTTTTAAGAGGTTATTATTAAACAAGTGCCAGGAAGAATTTGAGAGGGGTGAAAGAGAGCAGGAAGAAGCAAACAAGGTTGATGAAGGTGAGGTCAAGCAGTCTGATGAACAAAGGGAAGAGAAAAGAATAAAGGCAAGAAGACGCATGCTGGGTAATATCAGATTGATAGGAGAACTGTATAAGAAGAAAATGTTAACAGAGAGGATTATGCATGAGTGCATCAAGAAGTTATTAGGTCAGCAGCAGGATCCAGATGAAGAAGATATTGAGGCTTTGTGCAAGCTCATGAGTACAATTGGGGAGATGATTGACCATCCCAAAGCCAAGGTGCATATAGATGCATACTTTGAAAGGATGGGATTATTATCAAAAAACATGAATTTATCCTCAAGGGTGAGGTTCATGTTGAAAGATGCCATTGATTTGAGAAAGAACAAATGGCAACAAAGGAGGAAAATTGAAGGTCCAAAGAAGATCGAGGAAGTACACAGAGATGCTACCCAAGAGAGGCAGGCCCAAACAGGTAGGTTGGGTCGTGGTCTGGGCAATAATCCAGCAAGAAGAAACCCTGTTGATTTTGGTCCAAGAGGGGCATCTATGTTACCTTCACCTGTTGCTCAGATGGGTGGGGTACGTGGGCTTCCTGCTCAAATTCGCGGATATGGTTCACAAGATGCTCGTATTGAAGATAGGCATGATGCTAGGATTCTCTCAGTTCCACTGAGTCAAAGACTGGGTGATGATTCAATTACCCTAGGACCCCAAGGGGGTCTTGCTAGGGGAATGTCCATAAGAGGTTCAACTGCAGTTTCAAGTTCAACCAGTTTTAATGGTTATAGTAATTTAGCAGAGGGTTCACCATATAATTCTAGGGAGGGCCTAGCATCAAGATATATTCCAGATAGATTCGCTGCTCAAATTGCTTCTGATCAATCAAGTTCTCAAGAAGGAAATATCAATTACGGTAACATGGACTTGAGAAAGGCAGATGGGAATTTTGACAGACCTGTCGTAACTTCGCCGTCTCGACCTCATGGGACAGCAGTCTCCCAGAATCCTTCTTCAGAAAGGGTTTGGCCAGAAGAACGGTTGCGAGACATGTCAATGGCAGCAATAAGAGAATATTATAGTGCTAGGGATGAGAAGGAAGTTGTTTTGTGTGTGAAAGATTTGAACTCTCCAAGTTTCCATCCTTCCATGGTGTCGATTTGGGTCACAGACTCTTTCGAGAGAAAGAACACAGAGAGAGATCTTCTGGCTCAGCTACTAGTCAACCTTGTGAAATCTCAAGATGGTACCTTGAGTCAAGCCCAGCTCATCAAAGGGTTTGAATCTGTTCTCAGTACTTTGGAAGATGCGGTTAACGATGCCCCCAAAGCGCCGGAGTTTCTTGGCCGCATTTTTGCCAAAGTTGTAACAGAGCATGTAGTCTCTTTGAAAGAGATTGGGCAGTTAATACATAATGGCGGAGACGAAGCAGGCAGTCTCTTACAAGCAGGACTTGCAGCTGATGTTCTTGGAAACACCTTGGAGGTCATAAAAATGGAGAAAGGTGATGCTGTTTTAAGTGAGATCCGGACAAGCTCCAACTTGCGGTTGGAGACTTTCCGGCCACCCGAACCTTTGAAATCAAGGAAGTTAGAGAGTTTTATTTAG 5199 0.4366 MTVACVSFNKKSNNAQVGQSRVTPTPATESNSTYATRTVPNGSHVQPQFHGGSDAPVTHTNVKSTESSNSQRTARAVPKAPTSQPPTLSSDSAASTTPAKGDASKAFPFQFGSISPGFVNGMSIPARTSSAPPNLDEQKHAQARHDSFKPAPAPAPAPPVPRQHPVKKDTGITDQTHAGMRAKNDIQVSALPPGNQMQKPSVVPLSGISMPMAYHQPQASVQFGSPNPQIQSQGMSTASLQMPLPMPLPIGNAPQVQQQVFVAGLQPHQMHRGLMHQGQNMSFTPQMGPQLPHQLGSMGISIGPQYSPQQGGKFAPRKTTPVKITHPETHEELRLDKRADTSDGGSSGAKSHSSVSSQSQPAFPSINYYPSNSYGAHSPFYQPSSSNQITPTSQPQRFNYAVSQGPQNVSFMNSSSQSSLPANKVVNHIPGIVEPSNPKFFRDVHNAIPASSTGATSVSVKLSSGSGVVDLSVANSNISGAQKTQKSDSARSSVVSSNASSSLPQKGAETFSEVSLEQSNLSSDSSVLSSLPKQSTAYTKVTAAPMKHSSAVNEEAVSVVSNNDEKGKVCLSRPNSSKDNNKVQKEGQLQHPVAVQSPTVANVPSQDVERSTGGSETVGTKTTHSAAVTSEDVTETTEDTLSTPSLTMPYSEAKSNGAAELSSCVSADGPVAQAVDSLKTNDELDEFSQPDKLSKNKDSEMGEKTEISSIQGCKRELDEPTSCPPECVNQSSTALGSTTDVYLSRDDIAVGSEAVSASSGTLDQSSDILEATSEHRDDGLENGGSGVVSLPAPDTNDRPILDQNKVKTTSKGKKKRKEILQKADAAGSTSDLYNAYKGPEEKKDAVVSSDEVESVSISASLEQLSTNAAQPDALAGEQCRQSKTELDDWEDAADMSAPKLEVSDQTDQVIDGSVVTVKRYSRDFLLKFAEQCTDLPAGFEITADIAEALMSANISSSRDPQPSPGRIIDRPSGMSRMDRRSGGITEDDKWSKVSNVFHTGMRLDSIGGNAGFYPVQGGNFGVLRNPRSPLPYAGAGGILSGPMQSMGNLGGMPRNSSDSERWQRASSFQQRVLAPSTPQSPLQMMHKADKKYEVGKVTDVEEAKQRQLKAILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLAAELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKVDEGEVKQSDEQREEKRIKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQQQDPDEEDIEALCKLMSTIGEMIDHPKAKVHIDAYFERMGLLSKNMNLSSRVRFMLKDAIDLRKNKWQQRRKIEGPKKIEEVHRDATQERQAQTGRLGRGLGNNPARRNPVDFGPRGASMLPSPVAQMGGVRGLPAQIRGYGSQDARIEDRHDARILSVPLSQRLGDDSITLGPQGGLARGMSIRGSTAVSSSTSFNGYSNLAEGSPYNSREGLASRYIPDRFAAQIASDQSSSQEGNINYGNMDLRKADGNFDRPVVTSPSRPHGTAVSQNPSSERVWPEERLRDMSMAAIREYYSARDEKEVVLCVKDLNSPSFHPSMVSIWVTDSFERKNTERDLLAQLLVNLVKSQDGTLSQAQLIKGFESVLSTLEDAVNDAPKAPEFLGRIFAKVVTEHVVSLKEIGQLIHNGGDEAGSLLQAGLAADVLGNTLEVIKMEKGDAVLSEIRTSSNLRLETFRPPEPLKSRKLESFI 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243072g00001 1732 Coils Coil 1187 1207 - -
Stsc243072g00001 1732 Gene3D - 1539 1732 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 344 368 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 679 738 - -
Stsc243072g00001 1732 Pfam MA3 domain 1549 1657 IPR003891 -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 679 713 - -
Stsc243072g00001 1732 FunFam Eukaryotic translation initiation factor 4G 1105 1340 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 323 343 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 954 986 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 775 823 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 972 986 - -
Stsc243072g00001 1732 Gene3D - 1105 1340 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 542 654 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 1 102 - -
Stsc243072g00001 1732 ProSiteProfiles MI domain profile. 1544 1668 IPR003891 -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 724 738 - -
Stsc243072g00001 1732 FunFam Eukaryotic translation initiation factor 4G 1538 1731 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 479 506 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 301 368 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 1197 1221 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 568 654 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 123 170 - -
Stsc243072g00001 1732 Pfam MIF4G domain 1105 1327 IPR003890 GO:0003723|GO:0005515
Stsc243072g00001 1732 SUPERFAMILY ARM repeat 1101 1329 IPR016024 -
Stsc243072g00001 1732 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 290 1732 IPR045208 GO:0003743
Stsc243072g00001 1732 SMART ma3_7 1545 1659 IPR003891 -
Stsc243072g00001 1732 SUPERFAMILY ARM repeat 1540 1722 IPR016024 -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 1520 1541 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 1524 1538 - -
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 1 99 - -
Stsc243072g00001 1732 SMART if4_15 1105 1327 IPR003890 GO:0003723|GO:0005515
Stsc243072g00001 1732 MobiDBLite consensus disorder prediction 1340 1373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243072g00001 Stsc-Chr243072 1968 11022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243072g00001 65 1731 Eukaryotic Initiation Factors Gene Family AT3G60240 44.988 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243072g00001 K03260 - gmx:100796636 2198.32