Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243053g00002 ATGATGATGAATAGCAAGATAGAGGGATACACAAAGATATCTAGAAAGGTTGTTACAATTGTTGTTGTATTGAGCTGCATTGTGGGGCCAACCTCTTCTCAACCAGGCCCCGGCGCCGGTGGCGGCGCCAACGGCGTCCCCAATGAGGCTGCAGTTAATTTATTTGCACAGGAAATGTACAAAAGCATGGGTGGTTACACCAAAGTCTTCAAGGAATCAATCAAGAAACAGTTGGGATTTTGCATTGTGGATGCGGACCGAGATTGGGATGGTGCCTTCAATTTCTCCAAAGATCTCTCTTTCTTGACCAACTGTGCCAAGAGTGTACAAGGGGATATTACACAGAGAATGTGCATAGGATCAGAGCTTGATATGTATGCAACACTATTCAAAACTGGAAAAAGGTTTGTGAATCCAAATGTGAACTGCAACATGAGCACATGGCTGAATGGGTGTGAACCTGGATGGGCATGTAAGGCTAATGAGAAAGTGGAGCTTAACAGCACCCAAAAGGATATACCTGTTAGAAATTCAGATTGCCAACCCTGTTGTGAAGGCTTCTTTTGCCCTCCTGGTCTTACTTGCATGATACGATGTTTCACTTTGGCAACATGTGAACCTAAATCAGAAAACCAGAACATTACTGCATATGGTGTCCTGGTCTTTGCTGGAGTGTGTTTCATGCTCATTATCATATATAACTGTTCTGATCAAGTTCTTGCGACTCGAGAAAGAAGACAAGCAAAATCGAGAGAAAGGGCTGCAGCACATGTGAGAGAAACACAAGCGCGAGAGAAATGGAAATCAGCAAAAGACATAGCCAAGAAGCATGCAGTAGGCCTGCAATCGAGTTTGTCGCGAACATTTTCGCGCCAAAAGACTAACAAGGGATCAGGAACCTTGCCGCCTTCTACGACTAAAAAGGAAAAGAAAAAGGACAAGAGCAACCTCAGCAAGATAATAAGTGACATTGAGGAAGATCCTGATAGCCAAGAAGGTTTTAATATTCAGATAGGAGATAAGAATGTTAAGAAGCAAGCACCACCGAAGGGTAAGCAATTGCATACTCAGAGTCAAGTGTTCAAGTATGCATATAACCAGATTGAGAAAGAGAAGGCCTTACAGGAACAAATGAAGAACATGACCTTCTCTGGAGTTATCTCAATGGCTAATGAGATTGAGATAAGGAAAAGGCCTACCATTGAGGTTGCTTTTAAAGATTTAACACTCACTTTGAAAGGAAAAAACAAACACCTGTTAAGAAGTGTGACAGGTAAGTTGTTTCCCGGCCGGGTTTCGGCAGTTATGGGACCATCTGGGGCCGGCAAGACAACTTTTCTTTCTGCTCTGACCGGAAAAGCAGCTTCTGGTTGTACAACAACCGGACAAGTTCTTGTAAACGGCCAGGAATCGCCAATTCGGGCGTATAAGAAAATCATTGGATTCGTGCCACAAGATGATATTGTTCATGGCAATTTGACAGTGGAGGAAAATCTGTGGTTCAGTGCCAGATGCAGGCTCTCGGCTGATCTACCAAAAGAGGAGAAGGTTTTAGTGGTCGAAAGAGTCATCGAGGCTCTGGGTTTGCAGGCAATTAGGGACTCTATGGTTGGGACCGTGGAGAAGAGAGGAATCTCCGGAGGTCAGAGGAAAAGAGTAAACGTTGGACTCGAAATGGTGATGGAACCTTCACTTCTAATTCTAGATGAACCCACATCTGGTTTGGACAGTTCATCATCTCAGTTACTTCTTAGAGCACTTAGACGTGAAGCCCTTGAAGGAGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACATTGTTCAGGATGTTTGATGACTTTATATTGCTAGCTAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAGGTGGAAGAGTACTTTTCCGGCTTGGGAATCGTTGTCCCTGACCGTGTCAACCCTCCAGACTACTACATTGACATTTTAGAAGGAATCATAAAGATACCAGCAGGGTCAGGAGTGAGCCAGAAACAACTACCTGTTAGATGGATGCTGCATAACGGCTACCCGGTGCCAATGGATATGCTGGAGCTCATTGAAGGAATGTCTACTAACAACTCTACTGGTTCACCAAGTGTAGCAACTTCCACTCCAGATAATAATGTTGTTGGCCAATCTTTTGCTGGAGAACTTTGGCAGGATGTGAAGGCCAGTGTTGAGTCGAAGAAGGACAACTTCACCTATAAATTCTTGACTTCACACGATTTGTCCAATAGAAAGACACCTGGATCATTCACACAATACAAGTACTTTCTTGGAAGAGTTGGTAAGCAGCGTCTACGAGAAGCTAGATCACTTGGTGTAGATTTCATGATTTTGCTTCTAGCTGGACTTTGCCTAGGAACACTAGCCAAAATGAGTGATGAATCATTTGGAGCAACTGGTTATACATACACAGTAATAGCAGTATGTGAGTGTCATCAAAAGACAAATTTCCTTACTTGTTATACTAACCAAAATGCTTCTTTGTCATCTGATAAAGCTTTACTTTTCAGCACTCCTTTCGAAGATTGCGGCTTTGAGATCCTTCTCCTTGGATAA 2589 0.4326 MMMNSKIEGYTKISRKVVTIVVVLSCIVGPTSSQPGPGAGGGANGVPNEAAVNLFAQEMYKSMGGYTKVFKESIKKQLGFCIVDADRDWDGAFNFSKDLSFLTNCAKSVQGDITQRMCIGSELDMYATLFKTGKRFVNPNVNCNMSTWLNGCEPGWACKANEKVELNSTQKDIPVRNSDCQPCCEGFFCPPGLTCMIRCFTLATCEPKSENQNITAYGVLVFAGVCFMLIIIYNCSDQVLATRERRQAKSRERAAAHVRETQAREKWKSAKDIAKKHAVGLQSSLSRTFSRQKTNKGSGTLPPSTTKKEKKKDKSNLSKIISDIEEDPDSQEGFNIQIGDKNVKKQAPPKGKQLHTQSQVFKYAYNQIEKEKALQEQMKNMTFSGVISMANEIEIRKRPTIEVAFKDLTLTLKGKNKHLLRSVTGKLFPGRVSAVMGPSGAGKTTFLSALTGKAASGCTTTGQVLVNGQESPIRAYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIEALGLQAIRDSMVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFRMFDDFILLAKGGLTVYHGPVNKVEEYFSGLGIVVPDRVNPPDYYIDILEGIIKIPAGSGVSQKQLPVRWMLHNGYPVPMDMLELIEGMSTNNSTGSPSVATSTPDNNVVGQSFAGELWQDVKASVESKKDNFTYKFLTSHDLSNRKTPGSFTQYKYFLGRVGKQRLREARSLGVDFMILLLAGLCLGTLAKMSDESFGATGYTYTVIAVCECHQKTNFLTCYTNQNASLSSDKALLFSTPFEDCGFEILLLG 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243053g00002 862 MobiDBLite consensus disorder prediction 281 304 - -
Stsc243053g00002 862 Coils Coil 307 327 - -
Stsc243053g00002 862 Pfam ABC-2 type transporter 602 820 IPR043926 GO:0140359
Stsc243053g00002 862 SMART AAA_5 429 631 IPR003593 GO:0016887
Stsc243053g00002 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 638 IPR027417 -
Stsc243053g00002 862 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 350 820 - -
Stsc243053g00002 862 Gene3D - 391 639 IPR027417 -
Stsc243053g00002 862 CDD ABCG_EPDR 401 628 - -
Stsc243053g00002 862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 403 645 IPR003439 GO:0005524
Stsc243053g00002 862 Pfam ABC transporter 420 573 IPR003439 GO:0005524
Stsc243053g00002 862 ProSitePatterns ABC transporters family signature. 545 559 IPR017871 GO:0005524|GO:0016887
Stsc243053g00002 862 MobiDBLite consensus disorder prediction 251 270 - -
Stsc243053g00002 862 MobiDBLite consensus disorder prediction 278 316 - -
Stsc243053g00002 862 FunFam ABC transporter G family member 24 397 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243053g00002 Stsc-Chr243053 2049 6733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243053g00002 430 624 Calmodulin-binding Proteins AT2G36910 30.846 2.36e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243053g00002 - - gmx:100794093 997.653