Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243017g00001 ATGCCTCATCCTCTTCTTTCTCTTCTTCCACTTCCTCTTTCTTTCATCAAGGCCTTTGCTTTCTTTTCATCACTCTTGTTATTGCCAACATATGGAGCTAGTGATGTTGATAGTTACACAGCTTGTGCACCTTTTACCTGTGGAAACTTCAGCAACATTAGTTACCCATTTTGGAATGGCAACCAACCTGATTACTGTGGCCATCCAAGGTTCAAGCTTGATTGCCAACAAGACCAAGTGACTATAAACATCAAGTCACAGAAATTTGATGTCATTGACATCGATCAAAATGGCAAAAGTTTGAAGATTGCCAGGTTTGACTTATACAGTGATCCTTGTTCCAGGGACAATACCAATGTGAGTTTGGATAATGATTTCTTCAAATTCACTTCCAATGATGATAACATAACTCTGGTATATGACTGTAACTCTCCATATTTTCCTGATCCATATCTTTGGATGTTTAATTGCTCCATCTATGGTGGTGACCCTATTCCTGAATACTTAGTTCTGATGGAAAATTTGGATGCTATTTTTGATCTGGGGTGTAAATTTATCATTGTTCCTGTCCAAGCGAAGGAGCTACAAAGTTCCAATAATGGTCCCTTGGATGGTAAGTATGTTATAGATAAAGGTTTCGAGGTTGGGTGGAGTGGAGTGTATGAAAACCAATGTGATAGTTGCAAACAATCTGGTGGGAGGTGTGGACACAATGCATCTTTAAATGAATTCATTTGCTTCTGCAATAATAATCAGCAACCATATGGTGGGATTTGTAGCAGTAATAGTCTGTCTCAGTCACCAGCACCATCAGAGCCATTGTCATCACCTTATCCTGATCCACTAAATTATCCAGATCAGGGTGCTAAGAGAAATCGCCACAGATGGATAGTCTTTGGCATAGTTGCTGCTTCTGTGGTTGGAGTGCTAGTCCTTGCCATGGTGGCATTTCTTTTCTATCGAAGGAAAAAGAAGACTAGTTATGGAATGTCTTATACACAGCCGCGGAGCATGTCTTCTGATCCATCATCTTGGAAAGACACGGAGAAGGGAAGTCAATACTTTGGAGCGCACCTCTTTTCCTATACTGAACTTGAAGAGGCCACTAACTTCTTCGACCCATCCAGAGAACTAGGAGATGGAGGTTTTGGGACAGTGTATTATGGACAACTGCCAGATGGACGTTGTATTGCAGTGAAGAGGTTGTATGAGAACAATTATAGGAGAGTAGAACAATTCATGAATGAAATTGAGATCCTAACTCGCCTGCGCCACAAAAACCTTGTCTCACTATTTGGATGCACTTCTCGCCACAGCCGAGAACTTCTGCTTGTGTATGAGTATATTGCAAATGGAACTGTTGCTGATCATCTTCATGGAAACCGAGCCAAAGCTGGTACACTGCCCTGGCATATTAGGATGAACATTGCCCTGGAGACTGCAACTGCATTGGCATATCTTCATGAGTCTGAAATCATCCACAGAGATGTGAAAACCAATAATATTCTTCTTGATAGCCACTTTGTTGTGAAAGTAGCAGATTTTGGACTTTCGCGGCTTTTTCCAAACAATGTCACCCATGTTTCAACTGTTCCACAAGGAACTCCAGGTTACGTCGATCCGGAGTACCATGAATGCTACCAGCTTACTGTCAAAAGTGATGTATATAGCTTTGGAGTTGTGTTGGTTGAGCTTATATCATCCTTGCCGGCTGTTGATATCACAAGGCATCGGCACGAAATCAATTTGTCCAACATGGCCATTAACAAGATTCAGAATCAGACCCTGCATGAGCTAGTAGACAAAAATCTTGGGTTTGATTCAGACTTGAAGGTAAGGAAGATGATAAATGCAGTAGCCGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATTTGAGACCATCTATGCAAGAAGTGGTGGATACTCTCAAGGATATCCAGAGTGATGGCGAATACAAAAGCCAAAGCCATGCAGAAGTTATGGATATCTCATCAACAGCAGATGATGCTGTGTTGCTGAAGGATGATCCGCCTCCACCGTCCCCGGCTTCAACAGTAGAGAGCAAATCTACAACACCAAATGCTAGTGGATAA 2097 0.4187 MPHPLLSLLPLPLSFIKAFAFFSSLLLLPTYGASDVDSYTACAPFTCGNFSNISYPFWNGNQPDYCGHPRFKLDCQQDQVTINIKSQKFDVIDIDQNGKSLKIARFDLYSDPCSRDNTNVSLDNDFFKFTSNDDNITLVYDCNSPYFPDPYLWMFNCSIYGGDPIPEYLVLMENLDAIFDLGCKFIIVPVQAKELQSSNNGPLDGKYVIDKGFEVGWSGVYENQCDSCKQSGGRCGHNASLNEFICFCNNNQQPYGGICSSNSLSQSPAPSEPLSSPYPDPLNYPDQGAKRNRHRWIVFGIVAASVVGVLVLAMVAFLFYRRKKKTSYGMSYTQPRSMSSDPSSWKDTEKGSQYFGAHLFSYTELEEATNFFDPSRELGDGGFGTVYYGQLPDGRCIAVKRLYENNYRRVEQFMNEIEILTRLRHKNLVSLFGCTSRHSRELLLVYEYIANGTVADHLHGNRAKAGTLPWHIRMNIALETATALAYLHESEIIHRDVKTNNILLDSHFVVKVADFGLSRLFPNNVTHVSTVPQGTPGYVDPEYHECYQLTVKSDVYSFGVVLVELISSLPAVDITRHRHEINLSNMAINKIQNQTLHELVDKNLGFDSDLKVRKMINAVAELAFQCLQSSKDLRPSMQEVVDTLKDIQSDGEYKSQSHAEVMDISSTADDAVLLKDDPPPPSPASTVESKSTTPNASG 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243017g00001 698 Gene3D Transferase(Phosphotransferase) domain 1 449 663 - -
Stsc243017g00001 698 Gene3D Phosphorylase Kinase; domain 1 344 448 - -
Stsc243017g00001 698 SMART serkin_6 372 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243017g00001 698 Pfam Protein kinase domain 375 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243017g00001 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Stsc243017g00001 698 CDD STKc_IRAK 378 647 - -
Stsc243017g00001 698 ProSiteProfiles Protein kinase domain profile. 372 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc243017g00001 698 MobiDBLite consensus disorder prediction 665 698 - -
Stsc243017g00001 698 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 344 448 - -
Stsc243017g00001 698 Pfam Wall-associated receptor kinase C-terminal 182 250 IPR032872 -
Stsc243017g00001 698 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Stsc243017g00001 698 FunFam Wall-associated receptor kinase-like 20 449 657 - -
Stsc243017g00001 698 Pfam Wall-associated receptor kinase galacturonan-binding 42 104 IPR025287 GO:0030247
Stsc243017g00001 698 SUPERFAMILY Protein kinase-like (PK-like) 353 648 IPR011009 -
Stsc243017g00001 698 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 695 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243017g00001 Stsc-Chr243017 5070 15181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243017g00001 40 698 Receptor kinase-like Gene Family AT1G25390 43.658 3.15e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc243017g00001 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243017g00001 - - aip:107644271 823.928