Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc243012g00001 | ATGGAAGCTGACGCAGCCATTAAAGAAAGCGAGCAACACGATGATGAAATCTCTGATTCCTTTGTTTGCTGTGTTTGCCTGGAACTGTTGCACAAGCCCATTGTACTAGCGTGTGGTCATCTATCTTGTTTCTGGTGCGTCCATAAATCAATGGATATTATACGCGAGTCTCATTGTCCGATTTGTAGGCAAGCATACTATCACTTTCCAGCAATATGTCAAATGCTTCACTTTTTACTTCTTAAGCTGTATCCGGATGCTTACAAGAGAAGGTTACATCAGGTGCTTGAGGAAGAAAAGGAATTGGGATGTTTCTCCCCTCAATTTGATGCTGAAACATGTGGATCACAATCTAAAATCGATAATCCTGGGAGTTCACCTTCTGGTGCTACTAAAGATCCCTTGCCCAACTCAAGCAACTCGGAATCTTGTGAGTGTAAGGAAAAATCAGGCTCTTCAAATCATGAAGGAAAAGAAGGTTGCATCATTTCTGAGGTTATGGGAACTCCTTCCATTGAAGGGAAAAAAGTACCAGAGAATGACAAGCACAATCAGCAACAGAAAATAACAATTGCAGATGTCATTTGTACAAAGTGCAATCAAATGCTCTTTCATCCTATTGTTCTTAATTGTGGTCATGTATTCTGTGAAGCTTGCATGATGAACTTAGATGATCAGGCGCTTAAATGCCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTTTGTTTGGCCCTGGGTCACTTTTTGGAGGAACAATTTCCAGAAGAATATGCAAAGCGAAGAGATGCTGTTCAATTTAGTCAAGTTAAATTCAAACCTGAGATATCATCTTGTTCATCAGGAGATGGTGAAGCAAAAAAGATCAATCAAGTATCTGGTCTTCTATCAAGAATGCACAGAGGAGTTGGATGTGATTTTTGTGGGATGTTTCCGATTATCGGGGAGAGATACAAATGCATTGACTGTAAGGAGGAAATTGGTTTTGATCTTTGTGGTGATTGCCATAAAACGCATTCAAAGCTTCCAGGCCGATTCAATCAGCAACACACTCCTGAGCACAGGTTTGAGTCGGTACCAGGTTTTAGATCAGTTGGGGGGTGGTATGCACATGAGTCTCTGGAAATTTCAGAGCATATACCTGAAGATGCCAGTATGCCCAATGAAATTGATGAAGATAACGGGAACGAAAATGGAGCCCCCCTCTGA | 1215 | 0.4115 | MEADAAIKESEQHDDEISDSFVCCVCLELLHKPIVLACGHLSCFWCVHKSMDIIRESHCPICRQAYYHFPAICQMLHFLLLKLYPDAYKRRLHQVLEEEKELGCFSPQFDAETCGSQSKIDNPGSSPSGATKDPLPNSSNSESCECKEKSGSSNHEGKEGCIISEVMGTPSIEGKKVPENDKHNQQQKITIADVICTKCNQMLFHPIVLNCGHVFCEACMMNLDDQALKCQVCQSPHPRGFPKVCLALGHFLEEQFPEEYAKRRDAVQFSQVKFKPEISSCSSGDGEAKKINQVSGLLSRMHRGVGCDFCGMFPIIGERYKCIDCKEEIGFDLCGDCHKTHSKLPGRFNQQHTPEHRFESVPGFRSVGGWYAHESLEISEHIPEDASMPNEIDEDNGNENGAPL | 404 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc243012g00001 | 404 | SUPERFAMILY | RING/U-box | 300 | 360 | - | - | |
Stsc243012g00001 | 404 | PANTHER | UNCHARACTERIZED | 9 | 398 | - | - | |
Stsc243012g00001 | 404 | Pfam | Zinc finger, C3HC4 type (RING finger) | 22 | 65 | - | - | |
Stsc243012g00001 | 404 | SUPERFAMILY | RING/U-box | 190 | 237 | - | - | |
Stsc243012g00001 | 404 | ProSiteProfiles | Zinc finger RING-type profile. | 23 | 63 | IPR001841 | - | |
Stsc243012g00001 | 404 | FunFam | E3 ubiquitin-protein ligase PRT1 | 14 | 109 | - | - | |
Stsc243012g00001 | 404 | Pfam | RING-type zinc-finger | 196 | 230 | IPR027370 | - | |
Stsc243012g00001 | 404 | ProSitePatterns | Zinc finger ZZ-type signature. | 307 | 337 | IPR000433 | GO:0008270 | |
Stsc243012g00001 | 404 | ProSiteProfiles | Zinc finger RING-type profile. | 196 | 234 | IPR001841 | - | |
Stsc243012g00001 | 404 | FunFam | E3 ubiquitin-protein ligase PRT1 | 297 | 361 | - | - | |
Stsc243012g00001 | 404 | FunFam | E3 ubiquitin-protein ligase PRT1 | 183 | 279 | - | - | |
Stsc243012g00001 | 404 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 265 | IPR013083 | - | |
Stsc243012g00001 | 404 | MobiDBLite | consensus disorder prediction | 115 | 147 | - | - | |
Stsc243012g00001 | 404 | MobiDBLite | consensus disorder prediction | 115 | 158 | - | - | |
Stsc243012g00001 | 404 | MobiDBLite | consensus disorder prediction | 382 | 404 | - | - | |
Stsc243012g00001 | 404 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 91 | IPR013083 | - | |
Stsc243012g00001 | 404 | SMART | ring_2 | 196 | 233 | IPR001841 | - | |
Stsc243012g00001 | 404 | SMART | ring_2 | 23 | 62 | IPR001841 | - | |
Stsc243012g00001 | 404 | Pfam | Zinc finger, ZZ type | 301 | 342 | IPR000433 | GO:0008270 | |
Stsc243012g00001 | 404 | ProSiteProfiles | Zinc finger ZZ-type profile. | 302 | 366 | IPR000433 | GO:0008270 | |
Stsc243012g00001 | 404 | SUPERFAMILY | RING/U-box | 15 | 72 | - | - | |
Stsc243012g00001 | 404 | ProSitePatterns | Zinc finger RING-type signature. | 211 | 220 | IPR017907 | - | |
Stsc243012g00001 | 404 | Gene3D | - | 297 | 361 | IPR043145 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc243012g00001 | Stsc-Chr243012 | 1332 | 7187 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc243012g00001 | 6 | 63 | C3H Transcription Factor Family | AT1G74990 | 40.678 | 1.78e-09 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc243012g00001 | - | - | qsa:O6P43_026613 | 462.611 |