Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243012g00001 ATGGAAGCTGACGCAGCCATTAAAGAAAGCGAGCAACACGATGATGAAATCTCTGATTCCTTTGTTTGCTGTGTTTGCCTGGAACTGTTGCACAAGCCCATTGTACTAGCGTGTGGTCATCTATCTTGTTTCTGGTGCGTCCATAAATCAATGGATATTATACGCGAGTCTCATTGTCCGATTTGTAGGCAAGCATACTATCACTTTCCAGCAATATGTCAAATGCTTCACTTTTTACTTCTTAAGCTGTATCCGGATGCTTACAAGAGAAGGTTACATCAGGTGCTTGAGGAAGAAAAGGAATTGGGATGTTTCTCCCCTCAATTTGATGCTGAAACATGTGGATCACAATCTAAAATCGATAATCCTGGGAGTTCACCTTCTGGTGCTACTAAAGATCCCTTGCCCAACTCAAGCAACTCGGAATCTTGTGAGTGTAAGGAAAAATCAGGCTCTTCAAATCATGAAGGAAAAGAAGGTTGCATCATTTCTGAGGTTATGGGAACTCCTTCCATTGAAGGGAAAAAAGTACCAGAGAATGACAAGCACAATCAGCAACAGAAAATAACAATTGCAGATGTCATTTGTACAAAGTGCAATCAAATGCTCTTTCATCCTATTGTTCTTAATTGTGGTCATGTATTCTGTGAAGCTTGCATGATGAACTTAGATGATCAGGCGCTTAAATGCCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTTTGTTTGGCCCTGGGTCACTTTTTGGAGGAACAATTTCCAGAAGAATATGCAAAGCGAAGAGATGCTGTTCAATTTAGTCAAGTTAAATTCAAACCTGAGATATCATCTTGTTCATCAGGAGATGGTGAAGCAAAAAAGATCAATCAAGTATCTGGTCTTCTATCAAGAATGCACAGAGGAGTTGGATGTGATTTTTGTGGGATGTTTCCGATTATCGGGGAGAGATACAAATGCATTGACTGTAAGGAGGAAATTGGTTTTGATCTTTGTGGTGATTGCCATAAAACGCATTCAAAGCTTCCAGGCCGATTCAATCAGCAACACACTCCTGAGCACAGGTTTGAGTCGGTACCAGGTTTTAGATCAGTTGGGGGGTGGTATGCACATGAGTCTCTGGAAATTTCAGAGCATATACCTGAAGATGCCAGTATGCCCAATGAAATTGATGAAGATAACGGGAACGAAAATGGAGCCCCCCTCTGA 1215 0.4115 MEADAAIKESEQHDDEISDSFVCCVCLELLHKPIVLACGHLSCFWCVHKSMDIIRESHCPICRQAYYHFPAICQMLHFLLLKLYPDAYKRRLHQVLEEEKELGCFSPQFDAETCGSQSKIDNPGSSPSGATKDPLPNSSNSESCECKEKSGSSNHEGKEGCIISEVMGTPSIEGKKVPENDKHNQQQKITIADVICTKCNQMLFHPIVLNCGHVFCEACMMNLDDQALKCQVCQSPHPRGFPKVCLALGHFLEEQFPEEYAKRRDAVQFSQVKFKPEISSCSSGDGEAKKINQVSGLLSRMHRGVGCDFCGMFPIIGERYKCIDCKEEIGFDLCGDCHKTHSKLPGRFNQQHTPEHRFESVPGFRSVGGWYAHESLEISEHIPEDASMPNEIDEDNGNENGAPL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243012g00001 404 SUPERFAMILY RING/U-box 300 360 - -
Stsc243012g00001 404 PANTHER UNCHARACTERIZED 9 398 - -
Stsc243012g00001 404 Pfam Zinc finger, C3HC4 type (RING finger) 22 65 - -
Stsc243012g00001 404 SUPERFAMILY RING/U-box 190 237 - -
Stsc243012g00001 404 ProSiteProfiles Zinc finger RING-type profile. 23 63 IPR001841 -
Stsc243012g00001 404 FunFam E3 ubiquitin-protein ligase PRT1 14 109 - -
Stsc243012g00001 404 Pfam RING-type zinc-finger 196 230 IPR027370 -
Stsc243012g00001 404 ProSitePatterns Zinc finger ZZ-type signature. 307 337 IPR000433 GO:0008270
Stsc243012g00001 404 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Stsc243012g00001 404 FunFam E3 ubiquitin-protein ligase PRT1 297 361 - -
Stsc243012g00001 404 FunFam E3 ubiquitin-protein ligase PRT1 183 279 - -
Stsc243012g00001 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 265 IPR013083 -
Stsc243012g00001 404 MobiDBLite consensus disorder prediction 115 147 - -
Stsc243012g00001 404 MobiDBLite consensus disorder prediction 115 158 - -
Stsc243012g00001 404 MobiDBLite consensus disorder prediction 382 404 - -
Stsc243012g00001 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Stsc243012g00001 404 SMART ring_2 196 233 IPR001841 -
Stsc243012g00001 404 SMART ring_2 23 62 IPR001841 -
Stsc243012g00001 404 Pfam Zinc finger, ZZ type 301 342 IPR000433 GO:0008270
Stsc243012g00001 404 ProSiteProfiles Zinc finger ZZ-type profile. 302 366 IPR000433 GO:0008270
Stsc243012g00001 404 SUPERFAMILY RING/U-box 15 72 - -
Stsc243012g00001 404 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Stsc243012g00001 404 Gene3D - 297 361 IPR043145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243012g00001 Stsc-Chr243012 1332 7187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243012g00001 6 63 C3H Transcription Factor Family AT1G74990 40.678 1.78e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243012g00001 - - qsa:O6P43_026613 462.611