Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242g00006 ATGGCCACTTCCGCCGCCGCCACAACCGCAGCAGCGCCACGCCAGCTGTCGCAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCATCTTGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAAAGGCGCAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCCATTGAGAACCCTCAGGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGGGCAGTCTTGAAATTTGCCCAATACACAGGTGCTAATGCGATTGCTGGAAGACACACTCCTGGAACGTTCACTAATCAGATGCAGACATCATATAACGAGCCACGCCTTCTCATTCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACCATTGCCTTCTGTGACACTGATAGCCCAATGCGCTATGTCGATGTTGGCATTCCTGCCAATAACAAGGGAAAGCACAGTATTGGTTGTCTCTTTTGGTTATTAGCAAGGATGGTTCTTCAGATGAGGGGTACTATTCGTCCGGGTCTTAAGTGGGACGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAACAACAAGAGGATGAAGAATTACCCGCTGCCCCAGAATATGCCATTCAAGACTTTGGTGCCTCTGGCATTGCCAGCTTCCCTGCAGCTGATGGCGAATGGGGGTCTGTTCCAGCTGAACAACCCTGGCCTGAACCAGTTCCTCAACAACCTATTGCAGCCGCTCCTGCTAACTGGGCCCCAGATGCTGCTGCAGGTGATTGGGAGCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTCCACCGGCTGCCGGTCCTGCACCTGGAGGTGTTGCTCCCACTGGCTGGGATTAG 945 0.509 MATSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEDEELPAAPEYAIQDFGASGIASFPAADGEWGSVPAEQPWPEPVPQQPIAAAPANWAPDAAAGDWEPAPAPAPAPAPPAAGPAPGGVAPTGWD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242g00006 314 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 MobiDBLite consensus disorder prediction 289 305 - -
Stsc242g00006 314 Gene3D - 22 227 - -
Stsc242g00006 314 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 FunFam 40S ribosomal protein SA 22 228 - -
Stsc242g00006 314 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 PANTHER 40S RIBOSOMAL PROTEIN SA 12 295 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc242g00006 314 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 Hamap 40S ribosomal protein SA [rps-0]. 10 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Stsc242g00006 314 MobiDBLite consensus disorder prediction 248 314 - -
Stsc242g00006 314 NCBIfam 30S ribosomal protein S2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc242g00006 314 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc242g00006 314 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242g00006 Stsc-Chr242 56294 58913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242g00006 5 293 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.103 1.08e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242g00006 K02998 - gmx:100786575 451.825