Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242986g00002 ATGATGATTGGAGGAGGTGGTGGTGTTACACCTAACAACCATGTGAAGAAAAGATCAAGAAAGAACAGCGGAATTGGTGGGAATGAGAATGAACCATTGTTACCAAAGTCTCATCATCAAGAAGATAATAATAATAACAATGGTGATTTTAAAGGAGCTTCATTCTCCAGTGCAGTTTTCAATTTATCAACCACAATTATTGGTGCTGGGATCATGGCATTGCCTGCAACACTCAAAGTTTTGGGGATGGTTCCTGGCCTTATTACCATCATCTTCATGGCTTTCTTGACGGACAAGTCAGTCGAATTCATCATTCGATTTTCGCGCGCCGGCGGCATTACTTCTTATGGAGATCTCATGGGAGATGCCTTTGGGAAATTTGGGAAAGCTCTGCTGCAAATTAGTGTTATTATCAACAATCTTGGCATACTTGTTGTTTACATGATTATTATTGGTGATGTGTTATCTGGAACATCATCAAATAAAGATCACCATTATGGAATACTTGAAGGATGGTTTGGTGTACATTGGTGGACGGGTCGTAAATTTGTTCTTCTTGTTACCACACTCACTGTACTTCTTCCTTTGGTTAGCTTCAAGAGAATTGATTCGTTGAGTTTTACATCTGCAATATCAATTGCACTAGCAGTTGTGTTTCTTGTAATTGCTGTGGGAATCGCAATTGTGAAGATCATTAGTGGAGGAATTGGAATGCCAAGACTCTTCCCAGTTATTAATGATTTCACAGATTTCTTTCAACTCTTCACCGTTGCTCCTATTCTTGTCACTGCCTATATATGCCACTACAACGTTCACAACATAGAAAACGAAATGGAGGACAAGACGGAGATGCATGGAGTTGTACGGACGTCACTTGGAATGTGTTGTTCAGTGTACTTATTAACAAGCTTCTTTGGGTTTCTGTTATTCGGAGAAGAAACTCTTGATGATGTGATTGCAAATTTCGACGCTGATCTTGGAATCCCATTCGGATTCGCCATTAACGACGCCGTTCGATTCAGCTACGCGGCGCACCTCATGCTTGTTTTTCCAGTTGTGTTCTTTCCGCTACGAATCAACCTAGATGGTTTGATCTCTTCATCATCATCATCATCGAGGCCTTTGCTTCAAGATAACTTGAGATTTACGTCAATTACAATTGCTCTTGTTCTTCTAATATTCGTTGGTGCAAACTTCATTCCTACTATTTGGGACGCTTTTCAGTTCACCGGAGCAACCGCCACCGTTTTTGTTGGATTTATCTTCCCAGCTGCCCTCACTCTTAGGGATAGATACGACATAGCAACCAAACAAGACAAGATTCTTTCAGTTATGATGATGATATTGGCAGTATTCTCAAATGCTATGGCTATATACAGTGATGCCGTTGCCTTGGTCAATAAGGATAAAACCAAAACTTTTAAGTGA 1428 0.4034 MMIGGGGGVTPNNHVKKRSRKNSGIGGNENEPLLPKSHHQEDNNNNNGDFKGASFSSAVFNLSTTIIGAGIMALPATLKVLGMVPGLITIIFMAFLTDKSVEFIIRFSRAGGITSYGDLMGDAFGKFGKALLQISVIINNLGILVVYMIIIGDVLSGTSSNKDHHYGILEGWFGVHWWTGRKFVLLVTTLTVLLPLVSFKRIDSLSFTSAISIALAVVFLVIAVGIAIVKIISGGIGMPRLFPVINDFTDFFQLFTVAPILVTAYICHYNVHNIENEMEDKTEMHGVVRTSLGMCCSVYLLTSFFGFLLFGEETLDDVIANFDADLGIPFGFAINDAVRFSYAAHLMLVFPVVFFPLRINLDGLISSSSSSSRPLLQDNLRFTSITIALVLLIFVGANFIPTIWDAFQFTGATATVFVGFIFPAALTLRDRYDIATKQDKILSVMMMILAVFSNAMAIYSDAVALVNKDKTKTFK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242986g00002 475 Pfam Transmembrane amino acid transporter protein 52 463 IPR013057 -
Stsc242986g00002 475 PANTHER AMINO ACID TRANSPORTER 44 453 - -
Stsc242986g00002 475 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242986g00002 Stsc-Chr242986 8244 11020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242986g00002 28 468 Amino Acid or Auxin Permease AAAP Family AT5G38820 62.980 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242986g00002 K14207 - gmx:100795222 630.943