Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242982g00001 ATGTCTAAGTTAAAACAAGCATTCACCCAATTCACTGACTCTTCCAATAACAACAACAAGAAGAAGAAGCTCTTCTTGTCTCTCTTCGCTACCCTCCTTCTCGTCGCCTCCGTCGTCGCCATTGTCGCCGGTGTAAACTCCCACAAAAACAATAACTCCTCCACCTCTTCTTCTCTTGAACTCTCCCACCACTCCCACACCATCATCAAGAGCGCTTGCAGCTCCACATTCTACCAAGACCTCTGTTTCTCCGCCGTCGCCTCCGAGCCCGGCGTCACGAAGAAGGTCACTTCTCACAAAGATGTCATCGAATTGTCCCTCAATGTTACTTGTAGGACAGTGGAGCACAATTTCTTCGTCATCAAGAAGCTTCTGGAGGAGCGGGAGAAGATGCTCACCCATAGGGAGAGGATCGCCCTCCACGACTGCCTCGTCACCATTGATGAGTCCCTAGATGAGCTCCATCAGGCCTACTCTGACATCAAGCTCTATCCTAACTCTAACAAGAAGACTCTCTACCAGCACGCTGATGATCTCAACACCCTCATCAGTGCCGCCATAACCAACCAGGTGACTTGCTTGGACGGTTTCTCGCACGACGCTGCAGACAAGAAAGTAAGGAAGGCTCTAGAACAAGGTCAGGTACACGTGGAGCACATGTGCAGCAACGCATTGGCCATGACCAAGAACCTCACCGACACCGACATCGCTAACTACGAGCAGAAAATGCTGACGACGGCGACGGCGAACGGAGGATCGAGGAAGCTGATGACGACGATGGAGGAGGGAGAAGACGAGAATGGAATCAAGTGGCCGAAGTGGATGTCCGTTGGGGACAGGAGGCTGTTGCAGGCTGCGACGGTGAAACCGGACGTGGTGGTGGCGGCGGACGGGAGCGGGAACTTTAAGACGGTTTCGGAGGCGGTGAAGGCGGCGCCGGAGAAGAGTAGCAAGAGGTATGTGATTAAGATAAAAGCTGGTGTGTACAGAGAGAATGTTGAAGTTACGAAGAAGAAGATGAACATAATGTTTTTGGGAGATGGAAGAAGCAACACCATTATCACCGGTAGTAGGAACGTTAAAGATGGCGACACTACCTTCAACTCCGCCACCGTCGGTAAGTTCTCTTCACCCTAA 1137 0.5154 MSKLKQAFTQFTDSSNNNNKKKKLFLSLFATLLLVASVVAIVAGVNSHKNNNSSTSSSLELSHHSHTIIKSACSSTFYQDLCFSAVASEPGVTKKVTSHKDVIELSLNVTCRTVEHNFFVIKKLLEEREKMLTHRERIALHDCLVTIDESLDELHQAYSDIKLYPNSNKKTLYQHADDLNTLISAAITNQVTCLDGFSHDAADKKVRKALEQGQVHVEHMCSNALAMTKNLTDTDIANYEQKMLTTATANGGSRKLMTTMEEGEDENGIKWPKWMSVGDRRLLQAATVKPDVVVAADGSGNFKTVSEAVKAAPEKSSKRYVIKIKAGVYRENVEVTKKKMNIMFLGDGRSNTIITGSRNVKDGDTTFNSATVGKFSSP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242982g00001 378 SMART PMEI_2 64 227 IPR006501 GO:0004857
Stsc242982g00001 378 Pfam Pectinesterase 291 374 IPR000070 GO:0030599|GO:0042545
Stsc242982g00001 378 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 232 IPR035513 -
Stsc242982g00001 378 PANTHER PECTINESTERASE 37 373 - -
Stsc242982g00001 378 CDD PMEI-like_3 71 232 - -
Stsc242982g00001 378 NCBIfam pectinesterase inhibitor domain 54 232 IPR006501 GO:0004857
Stsc242982g00001 378 Pfam Plant invertase/pectin methylesterase inhibitor 68 227 IPR006501 GO:0004857
Stsc242982g00001 378 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 233 IPR035513 -
Stsc242982g00001 378 FunFam Pectinesterase 65 232 - -
Stsc242982g00001 378 Gene3D - 285 377 IPR012334 -
Stsc242982g00001 378 SUPERFAMILY Pectin lyase-like 286 373 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242982g00001 Stsc-Chr242982 12712 14738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242982g00001 1 372 Carbohydrate Esterase AT1G53830 60.215 7.25e-135 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242982g00001 K01051 - gmx:100776623 456.447