Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242959g00002 ATGACTGGGGAGAGTGATCATCTTCAAATTGATCCCTTAAAGAGTCCTTTCTTGTTGTCCGGGGCTAAAGTGGTGGACGGTTATGCAACCATGATGGTCACCTCCGTCGGAACCAACACCGCCTGGGGACAGTTGATGAGCTCTGTATCAAGAGGTGACACGGAGGAGAGAACGCCCTTGCAGGCACGTCTTGATAACTTGACCACATCCATTGGGAAAGCAGGCCTTGCTGTTGCCTTCCTTGTGTTTGTTGTAATGCTTATTCGTTATTTCACTGGAAACACTAGCACTGAGGATGGCTATACAGAGTTCAAGAGAGGTAGTACTGATTTGGATGATGTCTTCAATGCTGTTGTCAAGATAATTGCTGTTGCAGTCACCATTGTCGTTGTCGCCATCCCTGAAGGATTACCCTTGGCTGTCACTCTCACATTGGCTTATTCCATGAAGAGAATGATGGCGGATCAGGCTATGGTCAGGAAACTCTCTGCTTGCGAAACTATGGGCTCGGCAACGGTTATATGCACTGATAAAACTGGGACTCTCACTCTCAATGAGATGAGAGTCAACAAGTTCTGGTTAGGCCTAGAAAACATCATTGACAATTATTCTAATGCAATGGCCAACAATGTTGTGCGATTGTTCCACCAGGGAATAGGCCTCAATACAACCGGCAGTGTATATAAGCCTTCGCCGGAATCTGAGCCTGAAATCTCTGGTAGCCCTACAGAGAAAGCTATTCTCTTGTGGGCTGTATCGGATTTAGGCATGGACATGGATGAACTAAAGAAGAAGCATGAGATCATCCATGTTGAAACGTTTAACTCGGAGAAGAAACGAAGCGGGGTAGCAGTAAGGAAGAAGGGTGACAACACGGTACATGTGCATTGGAAAGGGGCTGCTGAGATGATACTTGCAATGTGTTGTAATTACATTGATAGCAATGGCACAGAGAAGTCCCTTGGTGAAAAAGAACGAGATGAAATTGAGAAAATAATTCAGGGAATGGCGGCTAGTAGCCTAAGATGCATTGCTTTTGCTCACATTGAAATGGATCACATCAACGATAAGGTACTAAGAGAAGATGGCTTGACATTGCTAGGAATCGTTGGCCTTAAGGATCCATGCCGACCGGAAGTCAAGAAGGCTGTGGAAACTTGCAAGTATGCGGGTGTTGATATCAAGATGATCACCGGAGATAACATATTCACGGCAAAGGCAATAGCAACAGAATGTGGAATATTAGACCTTAGTAATGATATAGCCAAGGGACAAGTGATTGAAGGTGAGGAATTTCGGAACTACACCGAGGAAGAGAGAATGGAGAAAGTAGATGATATTCGCGTGATGGCGAGATCATCTCCTATGGACAAACATTTGATGGTGCAATGCTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACAGGAGATGGTACCAACGATGCACCTGCTCTAAAAGAAGCTGATATTGGACTTTCCATGGGAATCCAAGGCACTGAAGTTGCCAAGGAAAGTTCTGACATTGTTATCTTGGATGACAACTTCAATTCTGTTGCTACGGTTTTAAGGTGGGGAAGATGCGTGTATAACAATATACAGAAATTTATCCAATTTCAACTAACAGTGAATGTTGCAGCACTTGTCATAAATTTTATTGCTGCAGTTTCTGCTGGTGATGTTCCCTTAACAACAGTTCAACTTCTATGGGTTAATCTCATTATGGATACTCTAGGTGCTCTAGCCTTGGCCACAGAACGGCCTACGAAGGAGTTAATGGAGAAACGGCCGGTCGGTCGAACCGAGCCGCTTATCACTAACATTATGTGGAGAAACCTTTTAACTCAAGCTTTGTATCAGATTGCTATCTTATTGGTTTTCCAATTCAAAGGGAAGGCAATATTCAATGTAGATGAGAAGGTGAAGAACACACTAATTTTCAATACTTTTGTTCTGTGCCAAGTTTTCAATGAGTTCAACTCTAGGAGTATGGAGAAACATAATGTGTTCAGAGGCCTTCACAGAAACCACTTGTTCCTTGGAATTGTTGGGATTACAATTGTTCTTCAAATTGCAATGGTGGAATTCCTGAGGAAGTTTGCTGATACAGAGAGATTAACATGGATCCAATGGGGATTTTGTGTTTTATTTGCAGCTGTGTCATGGCCACTTGCTTGGTTTGTAAAGATTATTCCTGTTCCAGATAAGCCATTTTTCAGCTTCAAGATTAAGCGGTCTTCTTAG 2241 0.4311 MTGESDHLQIDPLKSPFLLSGAKVVDGYATMMVTSVGTNTAWGQLMSSVSRGDTEERTPLQARLDNLTTSIGKAGLAVAFLVFVVMLIRYFTGNTSTEDGYTEFKRGSTDLDDVFNAVVKIIAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNEMRVNKFWLGLENIIDNYSNAMANNVVRLFHQGIGLNTTGSVYKPSPESEPEISGSPTEKAILLWAVSDLGMDMDELKKKHEIIHVETFNSEKKRSGVAVRKKGDNTVHVHWKGAAEMILAMCCNYIDSNGTEKSLGEKERDEIEKIIQGMAASSLRCIAFAHIEMDHINDKVLREDGLTLLGIVGLKDPCRPEVKKAVETCKYAGVDIKMITGDNIFTAKAIATECGILDLSNDIAKGQVIEGEEFRNYTEEERMEKVDDIRVMARSSPMDKHLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSAGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKRPVGRTEPLITNIMWRNLLTQALYQIAILLVFQFKGKAIFNVDEKVKNTLIFNTFVLCQVFNEFNSRSMEKHNVFRGLHRNHLFLGIVGITIVLQIAMVEFLRKFADTERLTWIQWGFCVLFAAVSWPLAWFVKIIPVPDKPFFSFKIKRSS 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242959g00002 746 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 732 IPR023298 -
Stsc242959g00002 746 SFLD C1.7: P-type atpase like 157 528 - -
Stsc242959g00002 746 PANTHER CATION TRANSPORTING ATPASE 1 732 - -
Stsc242959g00002 746 Pfam haloacid dehalogenase-like hydrolase 173 489 - -
Stsc242959g00002 746 FunFam Calcium-transporting ATPase 492 734 - -
Stsc242959g00002 746 SUPERFAMILY Calcium ATPase, transduction domain A 1 49 IPR008250 -
Stsc242959g00002 746 SFLD p-type atpase 157 528 IPR044492 -
Stsc242959g00002 746 Gene3D - 231 373 IPR023299 GO:0000166
Stsc242959g00002 746 PRINTS P-type cation-transporting ATPase superfamily signature 390 400 - -
Stsc242959g00002 746 PRINTS P-type cation-transporting ATPase superfamily signature 475 494 - -
Stsc242959g00002 746 PRINTS P-type cation-transporting ATPase superfamily signature 368 379 - -
Stsc242959g00002 746 PRINTS P-type cation-transporting ATPase superfamily signature 175 189 - -
Stsc242959g00002 746 PRINTS P-type cation-transporting ATPase superfamily signature 499 511 - -
Stsc242959g00002 746 FunFam Calcium-transporting ATPase 370 520 - -
Stsc242959g00002 746 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 181 380 IPR023299 GO:0000166
Stsc242959g00002 746 ProSitePatterns E1-E2 ATPases phosphorylation site. 177 183 IPR018303 -
Stsc242959g00002 746 Pfam E1-E2 ATPase 2 153 - -
Stsc242959g00002 746 NCBIfam HAD-IC family P-type ATPase 446 555 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242959g00002 746 NCBIfam HAD-IC family P-type ATPase 116 200 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242959g00002 746 Gene3D - 374 492 IPR023214 -
Stsc242959g00002 746 Gene3D - 493 733 - -
Stsc242959g00002 746 FunFam Calcium-transporting ATPase 185 375 - -
Stsc242959g00002 746 Pfam Cation transporting ATPase, C-terminus 560 730 IPR006068 -
Stsc242959g00002 746 Gene3D - 6 195 - -
Stsc242959g00002 746 SUPERFAMILY HAD-like 173 580 IPR036412 -
Stsc242959g00002 746 PRINTS H+-transporting ATPase (proton pump) signature 475 491 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242959g00002 746 PRINTS H+-transporting ATPase (proton pump) signature 329 347 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242959g00002 746 PRINTS H+-transporting ATPase (proton pump) signature 507 532 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242959g00002 746 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 732 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242959g00002 Stsc-Chr242959 7115 9652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242959g00002 1 745 Primary Pumps ATPases AT3G63380 72.118 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242959g00002 K01537 - gmx:100806797 1207.59