Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242952g00002 ATGAAGCTTGACGACTCCAACAACTCCAACGGTCAGATTTCCGCCGAAGCCGCCGATGACGTATACGTGCCGCCGCTCAACTTCGCCATGGTCGATCATGGCATTTTTAGGTCTGGTTTTCCCGACTCTGCCAACTTCAGCTTCTTGAAATCCCTTCGTCTCCGCACTGTTATATGTTTGTGCCCTGAACCGTATCCAGAAGTGACTTCTGAATTTCTCAAGGCCAACGGAATAAAGCTTTATCAATTTGGGATCGATGGCTGTAAGGAACCCTTTGTGAACATTCCAGATGACACAATTCGTGAAGCTTTGAAAGTAGTCCTCGATGTGAGGAACCACCCAGTACTAATTCATTGTAAACGAGGGAAGCACCGAACTGGTTGCCTGGTGGGATGCATCAGAAGATTGCAGAAATGGTGCCTATCTTCTGTATTTGATGAGTACCAGAGGTTTGCAGGTGCCAAGGCCAGAGTCTCGGATCAGAGGTTCATCGAATTGTTTGATATTTCTTGTCTCAAGAACAACCCGCTCTCGTTTTCATGCTCCAGGAAATAG 555 0.4703 MKLDDSNNSNGQISAEAADDVYVPPLNFAMVDHGIFRSGFPDSANFSFLKSLRLRTVICLCPEPYPEVTSEFLKANGIKLYQFGIDGCKEPFVNIPDDTIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQKWCLSSVFDEYQRFAGAKARVSDQRFIELFDISCLKNNPLSFSCSRK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242952g00002 184 PRINTS Plant and fungal dual specificity phosphatase signature 59 72 IPR020428 GO:0016791
Stsc242952g00002 184 PRINTS Plant and fungal dual specificity phosphatase signature 95 109 IPR020428 GO:0016791
Stsc242952g00002 184 PRINTS Plant and fungal dual specificity phosphatase signature 22 39 IPR020428 GO:0016791
Stsc242952g00002 184 PRINTS Plant and fungal dual specificity phosphatase signature 78 92 IPR020428 GO:0016791
Stsc242952g00002 184 Gene3D Protein tyrosine phosphatase superfamily 22 171 IPR029021 -
Stsc242952g00002 184 Pfam Tyrosine phosphatase family 22 176 IPR004861 -
Stsc242952g00002 184 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 22 169 IPR029021 -
Stsc242952g00002 184 FunFam probable tyrosine-protein phosphatase At1g05000 21 171 - -
Stsc242952g00002 184 ProSiteProfiles Dual specificity protein phosphatase domain profile. 27 179 IPR020422 GO:0006470|GO:0008138
Stsc242952g00002 184 ProSitePatterns Tyrosine specific protein phosphatases active site. 117 127 IPR016130 GO:0016311|GO:0016791
Stsc242952g00002 184 CDD PFA-DSP_Siw14 23 168 - -
Stsc242952g00002 184 PANTHER TYROSINE-PROTEIN PHOSPHATASE 21 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242952g00002 Stsc-Chr242952 9246 12056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242952g00002 8 184 Protein tyrosine phosphatase (PTP) family AT4G03960 69.492 2.75e-97 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242952g00002 K18045 - gmx:100785520 324.324