Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242925g00003 ATGCCGCCCGTTTATGTTGATAAAGTAAAAATTGAAAGCAGACGCATAAAAGACCCTTCTAACCCTGATCTTAAAAAGTGTTTTTACATTCGATGTGCACATAAGACATCAAATATCATATTCACCATACAATGTGAAACATGGTATTCCACTGGGCGAATTCTTCTTGGACAAGCACTTGTGCCTGTTGAGGATGTCATAAATGGTGATCAAGTAGATAAAAGGATTGAAATTGTGGATCATGCCAAAAAGCCAATACCTGGAACTCCAATGATCCATGTGAAGCTACAATTCTTTGATGCTAAAAGGAATCCAAACTGGGTTCAAGGCATCAAGGATCCTCACTTTCCTGGAGTTCCTCGCACTTTCTTCCCACAGCAAAGGGCATGTAAGGTTTCTCTTTACCAAGATGCTCACGTCCTAGACAGTTTTGTCCCGGGAGTAGTAGCTAATGGAGGTGAGAATTACAATCCTCAGAGATGTTGGGAGGAGATGTATGATGCAATCAATGAAGCAAAACACTTTATATACATCGCTGGTTGGTCTCTCTGTACTGAGATTTCTTTGGTAAGAGATCTAAATAGGACACATCCTGGAAGAGGCGAAACACTCAGTCAGTTGCTCAACAGAAAGGTAGAGAAAGATGGAGTTAGGGTTGTATTGCTTCTTTGGAATGATATAACAGTGATTTCGTTAATTGGAAACCTTGGGAAAATGGGTACTCATGATAAAGAAACCCAGAAGTATTTTAAAGGTAGTAAGGAGCATTGTGTTTTATGTACTCGTGATAACATTTTCCATACTCATCACCAAAAGATTGTGGTGGTGGATGCTAATACACTTGCCACTTATCACAAAAACGATTTTCATCAACCAAGCATCCATGGTGCTGACATCGAAAAAGGTGGTCCTAGAGAGCCATGGCATGACGTGCATTGTAAGTTTGAAGGGCCAGTTGCATGGGATGTTTATTCTACTTTTGTGCAGAGGTTTAAGAAACAGGGCATAGTGGGCTTGCTTCTTTCAGAAGAAAAGATTAAAGATTGCATTGTTTCGCCATCTCAAGTAACAGACTGTTATGATGGCGACACATGGAATGTTCAGTTATTCAGATCCATTGATAACAAAGCTATTCTTGGGCTTCCGGAGTCTGCTGAAGATGCTTTCAAATTTGGGCTTGTGAATGAGGAGAACAAGGTGATAGATAGAAGCATTCAAGATGCATATATTCAAGCTATTAGGCGGGCGAAGAATTTCATCTATATTGAGAATCAGTATTTCATAGGAAGCGACTTCGGTTGGAGTGTTGATGAAAAGAAAGAGCACCCTGATGCTGTGAATCTAATACCAAAGGAGCTTTCGCTTAAGATTGTTAGCAAGATCAAAGCCAAGGAAAAGTTTGTTGTGTATGTTGTTATTCCGATGTGGCCGGAGGGTGTTCCAAAGAGTGGAAATGTTCAGAAAATATTATACTTACAGAGGAGGACCATAGAAATGATGTACAAGGACATTGCTCAAGCACTCAAGGAAGAGGGAATAAACGAAGATCCTCAGCATTATTTGGCATTATTCTGCCTTGGCAATCGAGAGGTGAAGAAGGATGGAAAATATGAGCCTCAACAAACACCAACCGAAGATTCTGATTACTTGAAATCCCAAGAGGCGAGACGCTTCATGATTTATGTGCATTCAAAGATGATGATAGTTGATGATGAATATATAATCATTGGATCTGCCAACATCAATCAGAGATCAATGGACGGAGAAAGAGACACAGAAATCGCGATGGGAGCTTACCAACCATACCATTTGGCTACCAACTATGGTGGCGCGAGAGGCCAAATCCATGGCTTTCGCATGTCCCTATGGTATGAGCACCTCGGCAAACTTGACAAAGCCTTCCTCCACCGTGAAAGCAAAGAATGTATTAAGAAAGTGAATCAACTTTCTAGAGAGTATTTTAATGAATATGCTAGGGAGTCACCCATAGAAGACCTTCCTGGACACCTGCTCCATTATCCTCTTAAAATTTCTCCAGATGGAACCGTCACGAATATCGACAAATTGGAGTTCTTCCCGGACACAAATGCTCATATTCTAGGCAACAATGCCTCTGATATACTTACTGGTGTCCCTCCGGATATGTTGTGTGACATTGTTAAACCAACTCCCCATGTTCATGGACAAGTTAGTTCCACCGTAGTTGAACAAGTTCCCTTAAGCACTACCTAA 2232 0.4095 MPPVYVDKVKIESRRIKDPSNPDLKKCFYIRCAHKTSNIIFTIQCETWYSTGRILLGQALVPVEDVINGDQVDKRIEIVDHAKKPIPGTPMIHVKLQFFDAKRNPNWVQGIKDPHFPGVPRTFFPQQRACKVSLYQDAHVLDSFVPGVVANGGENYNPQRCWEEMYDAINEAKHFIYIAGWSLCTEISLVRDLNRTHPGRGETLSQLLNRKVEKDGVRVVLLLWNDITVISLIGNLGKMGTHDKETQKYFKGSKEHCVLCTRDNIFHTHHQKIVVVDANTLATYHKNDFHQPSIHGADIEKGGPREPWHDVHCKFEGPVAWDVYSTFVQRFKKQGIVGLLLSEEKIKDCIVSPSQVTDCYDGDTWNVQLFRSIDNKAILGLPESAEDAFKFGLVNEENKVIDRSIQDAYIQAIRRAKNFIYIENQYFIGSDFGWSVDEKKEHPDAVNLIPKELSLKIVSKIKAKEKFVVYVVIPMWPEGVPKSGNVQKILYLQRRTIEMMYKDIAQALKEEGINEDPQHYLALFCLGNREVKKDGKYEPQQTPTEDSDYLKSQEARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGERDTEIAMGAYQPYHLATNYGGARGQIHGFRMSLWYEHLGKLDKAFLHRESKECIKKVNQLSREYFNEYARESPIEDLPGHLLHYPLKISPDGTVTNIDKLEFFPDTNAHILGNNASDILTGVPPDMLCDIVKPTPHVHGQVSSTVVEQVPLSTT 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242925g00003 743 SMART pld_4 558 585 IPR001736 GO:0003824
Stsc242925g00003 743 PANTHER PHOSPHOLIPASE D 14 703 IPR015679 -
Stsc242925g00003 743 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 558 585 IPR001736 GO:0003824
Stsc242925g00003 743 Pfam Phospholipase D C terminal 631 702 IPR024632 -
Stsc242925g00003 743 Gene3D Endonuclease Chain A 149 348 - -
Stsc242925g00003 743 PIRSF PLD_plant 3 280 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc242925g00003 743 PIRSF PLD_plant 278 710 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc242925g00003 743 Gene3D Endonuclease Chain A 366 603 - -
Stsc242925g00003 743 SUPERFAMILY Phospholipase D/nuclease 104 333 - -
Stsc242925g00003 743 SUPERFAMILY Phospholipase D/nuclease 403 642 - -
Stsc242925g00003 743 Pfam PLD-like domain 410 594 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242925g00003 Stsc-Chr242925 9066 12945 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242925g00003 13 704 Phospholipase D Gene Family (Wang group) AT3G15730 54.852 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242925g00003 K01115 - sspl:121795050 843.573