Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242925g00002 ATGCTTCTTTCAGAGGAAGATTTTAAGCGTTTCATCGTTTCACCATCTCAAGTAATTGGCCCCAATGAGAAGGACGCGTGGAATGTTCAGTTATTCAGATCCATTGATGACAATGCTACCGTTGGGTTTTCAGAATCTGCTGAAGATGCTTTCAAATTTGGCCTTGTCCATGAGGAGGACAAGACAATAGATAGAAGCATTCAAGATGCATATATTCAAGCAATTAGGAGGGCGAAGAATTTCATCTATATTGAGAATCAGTATTTCATAGGAAGCGATTTCGATTGGAGTGTTGAGGAGAAAAAAGAGCATCCTGATGTCGTGAATCTGATACCAAAGGAGCTTTCGCTTAAGATTGTTAGCAAGATCAAAGCCAGGGAAAGGTTTGTTGTGTATGTTGTTATTCCGATGTGGCCGGAGGGTGTCCCAGAGAGTGGAAATGTTCAGAAAATATTATACTTGCAAAGGTGGACCATAGAGATGATGTACAAAGACATTGTTGAAGCACTCAAGGAAGAAGGACTAGATGAAGATCCTCAACAATATTTAGCATTCCTTTGTCTTGGCAATCGAGAGGTGAAGAAGGATGGAGAATATGACCCTCCAGAAAAACCACAAAAAGGTTCTGATTACTTGAAATCCCAGGAGGTCAGACGCTTCATGATTTATGTGCATTCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGATCTGCCAACATCAATCAAAGATCAATGAACGGAGGAAGAGACACAGAAATCGCCATGGGAGCTTACCAACCGTACCATTTGGCTACCAACTCTGGTGGCGCGAGAGGCCAAATCCACGGCTTCCGCATGTCCCTATGGTATGAGCACCTCAGCAAACTTGACAAAGCCTTCCTCAACCCTGAAAGCAAAGAATGTATTAAGAAAGTGAACCAACTTGCTAAAGTGTATTTTGATGAATATAGGGAGTTGCCCATTCAAGACCTTCCTAGGCACCTACTCCATTATCCTATTAAAATTTCTGCAGATGGAACCGTCACAAATATCCAAAATTTGGAGCACTTCCCTGACACAAGTGGTAGTATTCTAGGCAAGAATGCCTCAGATATAGTTACTCGTGTCCTTCCGGATATCGTGTATGACATTTATCGACCAAATAATCCCCCTGCTCATCAATCTGGACAAGTTCCACCACCATAG 1194 0.4179 MLLSEEDFKRFIVSPSQVIGPNEKDAWNVQLFRSIDDNATVGFSESAEDAFKFGLVHEEDKTIDRSIQDAYIQAIRRAKNFIYIENQYFIGSDFDWSVEEKKEHPDVVNLIPKELSLKIVSKIKARERFVVYVVIPMWPEGVPESGNVQKILYLQRWTIEMMYKDIVEALKEEGLDEDPQQYLAFLCLGNREVKKDGEYDPPEKPQKGSDYLKSQEVRRFMIYVHSKMMIVDDEYIIIGSANINQRSMNGGRDTEIAMGAYQPYHLATNSGGARGQIHGFRMSLWYEHLSKLDKAFLNPESKECIKKVNQLAKVYFDEYRELPIQDLPRHLLHYPIKISADGTVTNIQNLEHFPDTSGSILGKNASDIVTRVLPDIVYDIYRPNNPPAHQSGQVPPP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242925g00002 397 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 220 247 IPR001736 GO:0003824
Stsc242925g00002 397 SMART pld_4 220 247 IPR001736 GO:0003824
Stsc242925g00002 397 Pfam PLD-like domain 72 255 IPR025202 -
Stsc242925g00002 397 Gene3D Endonuclease Chain A 17 264 - -
Stsc242925g00002 397 PANTHER PHOSPHOLIPASE D 20 364 IPR015679 -
Stsc242925g00002 397 SUPERFAMILY Phospholipase D/nuclease 65 305 - -
Stsc242925g00002 397 Pfam Phospholipase D C terminal 293 363 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242925g00002 Stsc-Chr242925 2274 4000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242925g00002 1 362 Phospholipase D Gene Family (Wang group) AT1G52570 63.562 4.50e-161 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242925g00002 K01115 - pop:18096711 478.018