Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242925g00001 GTTACTCTTTACCAAGATGCTCACATCCTAGACAGTTTTGCCCCGGGAATAGTGGTTGATGGAGATCCAAATAGGCCACATCCTGAAAGAAGCGAAACACTTGGTGAATTGCTTGTGAGAAAGGCAAACGACAAGGTTAAGGTTGTAGTGCTTCTTTGGAATGATATAACAGATATTCGAGTAATCGAAAAGCCTGCAATAATGCACACTCATGATAAAGAAACCCAAGTGTATTTTGAACATACTAAGGTCCATTGTGTTTTATGTACTCGTGGGAGTATTTTCCAAGGTAGTAATGTTTTCCTCAGTCATCACCAAAAGATTGTGGTGGTGGACGCTAAGTTGCCAAATAATGGAGATGAGTCAAACAAAAGAAGAATAGTGGATTTCATTGGAGGTCTTGATCTCTGTGATGCAAGATATAATACTCCAACTCATTCTCTTTTTAGAACCTTGAATCATGAACACAAACAAGATTTCTATCAACACTGCATTGCTGGTGCAACAATAAAAAAAGGTGGGCCGAGAGAGCCATGGCATGACGTGCATTGTAAGCTTGAAGGGCCAATCGCATGA 576 0.4028 VTLYQDAHILDSFAPGIVVDGDPNRPHPERSETLGELLVRKANDKVKVVVLLWNDITDIRVIEKPAIMHTHDKETQVYFEHTKVHCVLCTRGSIFQGSNVFLSHHQKIVVVDAKLPNNGDESNKRRIVDFIGGLDLCDARYNTPTHSLFRTLNHEHKQDFYQHCIAGATIKKGGPREPWHDVHCKLEGPIA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242925g00001 191 Pfam Phospholipase D Active site motif 102 140 IPR001736 GO:0003824
Stsc242925g00001 191 PANTHER PHOSPHOLIPASE D 25 191 IPR015679 -
Stsc242925g00001 191 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 100 140 IPR001736 GO:0003824
Stsc242925g00001 191 Gene3D Endonuclease Chain A 24 191 - -
Stsc242925g00001 191 SUPERFAMILY Phospholipase D/nuclease 32 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242925g00001 Stsc-Chr242925 1528 2219 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242925g00001 1 191 Phospholipase D Gene Family (Wang group) AT3G15730 45.148 3.91e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242925g00001 K01115 - cave:132166466 211.46