Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242917g00002 ATGCAACGTCGTCTCAGAAGTATTGCCACAACGGTAGCAATCGATGAGAAGAGGCACCTGGCAGCACAGTCAGTAATGGAGACGGCGGAGAGAGAAAATGGAGTGATCGTGCCACCTCGTTCCGGTGCTGGCAAAAGCCTGTTCGGAATCACCGCCGCAGCTTCTAGAAGGACGCAACAGTATAGAGAGAAGGAGAACTCTAACGCTCCTTCGCCTTCAAATTACGATGTGGCAGTAACAGGGACGCTTAGTAGAAAGAAGAAGCATAAGCGTCTTCAGGATATTTTTACACCGGACTATAATAATTTGAGCAGCGATGGTCCTCCTGTTGGTCTTGAATTTGATTCTCTCCCTTCTCGGTCAGAAAGTTACACTCCTTCATACGAAGAGGACTACGGGCCCACCAAAATGAGAAAGGTTTCCAAGAGTGCATGCAGAAGTCAGCCAAGCTGTAATAAGAAAGCATCAGTGAAGAAACATGGTATGGGCAAAGGTTTGATGACAGTCTGGAGGGCAACCAATCCTGAGGTGGAAGACCTTCAAATTCATTATGATTTTGATAGCCGAAAGCAAGGTGCTCATCTAATGTCAAAGTCTTTGGGACGGAAACCAGTTTGTGAGAACAGAAGAAATAAAACACAGGACAAGAGGAAACTTTCCATACAAAGACAAGTGGGGAAATCTAATCAATATGTAACTCAGAACCAGTTATCGAAAGAAAAATGTGAACTTGCACTGAATAGCGCAATATCTGAGGAAGAATTTGGTCGAATTTCAATGTTAGTCGATGATGAGGAGCTTGAGATGAGAGAGTTACGAGCAGGAACCAATATGCTGATTTGTTCTGATCATCTTGCTGCAAGTGGAATGTTTGGCTGCTCACTCTGCAAAGATGTGCTAGTTAAGTTCCCCCCAGATACTGTTAAAATGAAGAAACCTGTCTGTTTGCAACCTTGGGACTCCTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTTCATTTCCTTTATACATATGCTACAGTAGTCAATATATGCCCATTCACTCTGGATGAGTTTGTTCAATCATTTCATGATAAGGACTCAGTTTTACTTGGAAAGATTCACATAGCCCTTCTCTCACTTCTTCTATCTGACATTGAAGTGGAGCTTACCGATGGTTTTTCACCTCATTTAAATAAATCCTGCAACTTTCTTGCATTGCTTCATTCAGTTGAAAGTCAAGAATATTCTGTAGATTGCTGGAGAAGTTCTCTGAATGCTCTTACTTGGGTTGAAATACTCCGTCAAGTGCTTGTTGCTTCTGGATTTGGTTCAAAGCAAGGGGCCTTACGAAGAGAGGCCCTTAGCAAGGAGTTGAATCTTTTTGTAAACTATGGTCTACACCCTGGCACATTGAAGGGAGAGTTGTTTAAAATCTTGTCAGAGCAGGGAAACAATGGGTGCAAGTTATCTGAGCTAGCAAACTCAAAACAGATTGTTGAATTAAACCTTCATGCCACAACTGGGGACCTTGAGTCTTTAATATGTTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCTCCGTCTGCATATCGTCTACGTATGAGCACTGTTACAGAGGACATGGATGATTCTCAGTCAGATTTGGAGGACAATGGGAGTGTTGATGATGAAATCAATTACAATGATACATGTAGCAGTGATGATGATTTTGAAAATGATTCAAGAAGCACCAACATGAGAAAACTGAAGCGTGCAAACAGTCATAAAACCAAGAATAATATGCTCAAAGTATATACTGAAATTGATGAGAGCCATCCAGGAGAAATATGGTTGTTAGGACTGATGGAGAGTGAATATTCAGATTTGAACGTTGAAGAAAAATTGAATGCTTTGGCAGCTCTAACTGATCTTCTTTCCTCCGGTTTCAGCATCAGGATGATGAGTCCAGCGAAAATTGCAGCTGACTGCCATTCGAGCATCAAACATGGTTCTGGAGCAAAAATAAAAAGATCATCATCAGTAAAGAAGCCGGGACCATTTTTGTACCAGATTGGACAACTGCAATGTGGAAAAGAATTGAACTCATCTTTTCATCCATGTCCAGTAGATTCCACATCTTTAATCTCAAATTCCAGCAACCAGGGGGAGAAAGAAAAAAGCTCAACTGATTCACATCCCATTCAATCAGTATTTTTGGGATCTGATCGTCGCTACAATAGATACTGGCTTTTCCTGGGCCCTTGTAATGCTGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCCTCTGAAGATGGTCACTGGGAAGTGATTGATACTGAAGAGGCCTTACATGCCTTGCTATCGGCATTGGATGATAGAGGGAAACGGGAGGCTCATCTTATTGAATCTCTGGAGAAGCGGCAAGCATCTCTTTGTAGGCTTATGTCTAGGACGAAGGTTTACAATAATGGAACGGGTTCCGCGTCGCATTCTGATCAATCTGAGCTGGATATGGTTTCAGATGACAGTTATTCTCCAGTGTCTGATGTAGACAATCTGAATCTGATTGAGACCGCAAAAGACACACTACCTTCAGCAGGGGCGGTGATAATTGAAGCTGGAAAGAAGGCTGAGGAACAAGCACAAAAGTGGCTCCGTGCTCAAGGATATGATTCTTGGATTTGGGGATCCTTTTATTTAGATCTTAATGTTGTAAAGTATGGTAGAAGGTCTTATCTTGATTCTCTAGCGAAATGTCTGACTTGTCATGATCTATACTGGAGAGATGAGAGACACTGCAGAATTTGCCATACCACATTTGAGCTTGATTTTGATCTAGAAGAGAGATACGCCATTCACAGAGCCACATGCAGTCAGAAAGAGGATGTTAATACATTTCCAAATCATAAAGTCCTATCATCACAGATTCAATCACTGAAAGCTGCAATTTATGCCATTGAGTCTGTTATGCCCGAAGATGCTCTGGTTGGTGCTTGGAGGAAATCTGCTCATAAGCTATGGGTCAAACGACTCAGACGCACTTCATCTTTAGTCGAGCTTTTGCAGGTTCTCTCTGATTTTGTTGCCCTTGCGCTCTGGTTGGTGAAGTTAGATGCTATAATTGCTCCCTACCTTGACAGAGGTCCTCCTCAGAAGAAGCAAGGAATCAGTAAGTCTTTGGATCTATGA 3165 0.4186 MQRRLRSIATTVAIDEKRHLAAQSVMETAERENGVIVPPRSGAGKSLFGITAAASRRTQQYREKENSNAPSPSNYDVAVTGTLSRKKKHKRLQDIFTPDYNNLSSDGPPVGLEFDSLPSRSESYTPSYEEDYGPTKMRKVSKSACRSQPSCNKKASVKKHGMGKGLMTVWRATNPEVEDLQIHYDFDSRKQGAHLMSKSLGRKPVCENRRNKTQDKRKLSIQRQVGKSNQYVTQNQLSKEKCELALNSAISEEEFGRISMLVDDEELEMRELRAGTNMLICSDHLAASGMFGCSLCKDVLVKFPPDTVKMKKPVCLQPWDSSPEIVKKLFKVFHFLYTYATVVNICPFTLDEFVQSFHDKDSVLLGKIHIALLSLLLSDIEVELTDGFSPHLNKSCNFLALLHSVESQEYSVDCWRSSLNALTWVEILRQVLVASGFGSKQGALRREALSKELNLFVNYGLHPGTLKGELFKILSEQGNNGCKLSELANSKQIVELNLHATTGDLESLICSTLSSDITLFEKISPSAYRLRMSTVTEDMDDSQSDLEDNGSVDDEINYNDTCSSDDDFENDSRSTNMRKLKRANSHKTKNNMLKVYTEIDESHPGEIWLLGLMESEYSDLNVEEKLNALAALTDLLSSGFSIRMMSPAKIAADCHSSIKHGSGAKIKRSSSVKKPGPFLYQIGQLQCGKELNSSFHPCPVDSTSLISNSSNQGEKEKSSTDSHPIQSVFLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALHALLSALDDRGKREAHLIESLEKRQASLCRLMSRTKVYNNGTGSASHSDQSELDMVSDDSYSPVSDVDNLNLIETAKDTLPSAGAVIIEAGKKAEEQAQKWLRAQGYDSWIWGSFYLDLNVVKYGRRSYLDSLAKCLTCHDLYWRDERHCRICHTTFELDFDLEERYAIHRATCSQKEDVNTFPNHKVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSSLVELLQVLSDFVALALWLVKLDAIIAPYLDRGPPQKKQGISKSLDL 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242917g00002 1054 MobiDBLite consensus disorder prediction 540 565 - -
Stsc242917g00002 1054 MobiDBLite consensus disorder prediction 538 574 - -
Stsc242917g00002 1054 MobiDBLite consensus disorder prediction 705 725 - -
Stsc242917g00002 1054 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 726 799 IPR028941 -
Stsc242917g00002 1054 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 605 642 IPR028942 -
Stsc242917g00002 1054 Pfam DDT domain 326 379 IPR018501 -
Stsc242917g00002 1054 PANTHER HOMEOBOX PROTEIN SIX 214 1043 - -
Stsc242917g00002 1054 MobiDBLite consensus disorder prediction 117 158 - -
Stsc242917g00002 1054 ProSiteProfiles DDT domain profile. 323 382 IPR018501 -
Stsc242917g00002 1054 SMART testlast3 323 382 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242917g00002 Stsc-Chr242917 9454 16835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242917g00002 221 1017 Homeobox Transcription Factor Family AT1G28420 26.486 3.14e-73 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Stsc242917g00002 WSD 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242917g00002 - - gmx:100792062 1408.28