Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242913g00005 ATGGGTGTCCTATTGGGCGTCTCAAACGAGATATTGGGAATTCCTTACTTCCATTCCTTTCCCACCATTTTCTTTCTTTCTCTCTCAACTCTCAACCACTCACAACTTCCGCCAATGGCTTCATCGGAAAATCCCAACTGGGTTTTAGACTACGCTTATCTCGACGACATTCACTCTCTTTCCGACCCTTCCAACTTCTCTTGGCCGCCTCCTCCTCCAACCACTCTAAGTGTCGACCTTCATGACTCGCTTCCAAATTCAAATCCACCCGATCAATCTGCCTCAAGAAAACGCTTGAGGTCAGGATCCTGCAACCCTTCTTCTGGTTCAAAAGCATGTAGAGAGAAAATGCGACGGGATCGATTGAATGACAGATTTTTGGAGCTTGGTTCCATTTTGGACCCTGGAAGGCCTCCCAAAATGGATAAGGCTGCTATACTCAGTGATGCGGTTCAACTGGTTTCGCAGTTGCGAGGCGAGGCTCAGAAGCTTAAAGAATCCACTGAGAATCTGCAGGAGAAAATCAATGAATTGAAGGCTGAGAAAATTGAGCTCCGTGACGAGAAGCAGCGGCTAAAAGCGGAGAAAGATAGCCTTGAGAAGCAGCTCAAAGCCTTGAATACACAACCTGGTTTCATGCACCACCCTCCAACACTTCCAGCTGTTTTTCCTCATCCACCAGGGCAAGTTCTTGGAAGCAAGCTGGTACCTTTCATGGGCTACCCAGGAGTTTCCATGTGGCAGTTTTTACCGCCTGCTGCTGTCGACACATCGCAGGACCATGTACTCCGGCCGCCGGTTGCATAA 807 0.4857 MGVLLGVSNEILGIPYFHSFPTIFFLSLSTLNHSQLPPMASSENPNWVLDYAYLDDIHSLSDPSNFSWPPPPPTTLSVDLHDSLPNSNPPDQSASRKRLRSGSCNPSSGSKACREKMRRDRLNDRFLELGSILDPGRPPKMDKAAILSDAVQLVSQLRGEAQKLKESTENLQEKINELKAEKIELRDEKQRLKAEKDSLEKQLKALNTQPGFMHHPPTLPAVFPHPPGQVLGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242913g00005 268 CDD bHLH_AtILR3_like 111 186 - -
Stsc242913g00005 268 Pfam Helix-loop-helix DNA-binding domain 110 157 IPR011598 GO:0046983
Stsc242913g00005 268 MobiDBLite consensus disorder prediction 79 110 - -
Stsc242913g00005 268 Coils Coil 147 209 - -
Stsc242913g00005 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 181 IPR036638 GO:0046983
Stsc242913g00005 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Stsc242913g00005 268 SMART finulus 112 163 IPR011598 GO:0046983
Stsc242913g00005 268 MobiDBLite consensus disorder prediction 64 116 - -
Stsc242913g00005 268 Gene3D - 110 184 IPR036638 GO:0046983
Stsc242913g00005 268 PANTHER BHLH TRANSCRIPTION FACTOR 42 268 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242913g00005 Stsc-Chr242913 13079 14662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242913g00005 39 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.447 1.00e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242913g00005 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242913g00005 - - mnt:21402686 306.605