Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242887g00001 ATGGCAGGCATAGCCAGTTTCTTCAGCAAGTTCATCTCTTTGTTCATCATCCTCATTGTTCACCTTGGATGCTTCATCTTCACAACAACAAAGCAAGAAAACAACAACGACAACAACAATTTCTTGCAACCATCTTCAAAGAAACGCAAAATCTCACCTTCATCATCATCACACTCACAACCCTCTTCACCTTCCCACCCAAAACTCAAAACCCACAAAGCACTCTCGTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACCAAAACCAAAACCGCCACAACAACCACCCATCCCTCCCCACAATCCTCCTCGGTCACCACCACCACCACTGTCACAACCACCAACTCCGCCTCCGCCACCGTCACCGCCGCCAGGTCCTCTCAAAATTCTCTTATTTCCTCCTTGCAACCCGACCAAAATTTACTAGACCTTCCTCGCCGGATCCTTCCCGGATCCTTGATCCGACCCGAAAACGAGACCGCCGGAGAGCTGGACAGTGGCCTCTTCTTCCCTCTCCGGAATGATATATTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAGCCGCTCCTCCTGGAGCAGCACCAATCCACCAAGCACGCGGTGTCGGAGCTACCGGGATCAGACCCGGGTCACAACATAGTCCAGATCATATTCAAGTCGGGTTGGCCCGAGACCAGAAAGTTCCCGGCGATAACCCGGATCCTTAAGATCCATAACAGCCAAAAGATTCTCTCGCGATTCGAGGAGTATCGCGAGGCCGTCAAGGCGAGGGCTGCACGTCATGGCGGCAGCGGCGTGGGGTCCACGCGCCGCCGTGACGAGAGATGCCTCGCCGACGGCAATGAGCTCATGAGGTTTCATTGCTCAACTTTTTTATGTGATTTGGGGCTTAACGGGGATTCTTCAATTTGTTCCCAACAATATTGTAATATTTGCGGGATAATTAAATCAGGTTTTTCGCCGAAATTGGATGGAATTTCCACGTTGGCCTCCAGCTGGAGGGCCCACGTGTCGATCCCGGAGGATATTGAAAGTGAGTTTCGCTTCATGAACGTGAAGCGAGCCATGTTGGTTTGTCGAGTTATCGCCGGTCGGATTGGATCGGATTTAGACGAGCCTGAGAAGGAGGACGGCGGGAGTTTCGACTCTGTGATGGCACGTGGCGGCAACACCGGAGTGTACACTCGGCTAGATGAAGAGGAGCTTTTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1269 0.5185 MAGIASFFSKFISLFIILIVHLGCFIFTTTKQENNNDNNNFLQPSSKKRKISPSSSSHSQPSSPSHPKLKTHKALSSSWHFIKHLFSTKTKTATTTTHPSPQSSSVTTTTTVTTTNSASATVTAARSSQNSLISSLQPDQNLLDLPRRILPGSLIRPENETAGELDSGLFFPLRNDIFPCTACGEIFQKPLLLEQHQSTKHAVSELPGSDPGHNIVQIIFKSGWPETRKFPAITRILKIHNSQKILSRFEEYREAVKARAARHGGSGVGSTRRRDERCLADGNELMRFHCSTFLCDLGLNGDSSICSQQYCNICGIIKSGFSPKLDGISTLASSWRAHVSIPEDIESEFRFMNVKRAMLVCRVIAGRIGSDLDEPEKEDGGSFDSVMARGGNTGVYTRLDEEELLVFNPRAVLPCFVIVYSV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242887g00001 422 MobiDBLite consensus disorder prediction 92 116 - -
Stsc242887g00001 422 MobiDBLite consensus disorder prediction 36 70 - -
Stsc242887g00001 422 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 77 420 - -
Stsc242887g00001 422 SUPERFAMILY ADP-ribosylation 203 421 - -
Stsc242887g00001 422 Gene3D - 202 421 - -
Stsc242887g00001 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
Stsc242887g00001 422 ProSitePatterns Zinc finger C2H2 type domain signature. 180 201 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242887g00001 Stsc-Chr242887 8452 10363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242887g00001 79 422 C2H2 Transcription Factor Family AT2G29660 53.977 1.19e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242887g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242887g00001 - - aip:107608029 649.432