Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242857g00002 ATGGCGGCTTCCGTTGATAACCGTCAATACCCAGCCCCAGGACTCCAAGTCCAAACCCCTTTAAACGGCGTCGTACGCACTTTCAAGCCCTCCCACAATAATAACCGCTCTGATTCCCCCATTCGCGGTTATAACAATAACAAACTCCCACAAAATACGGACTTCACGCGCCCCGAGAAGTCACCTGATTCCCCATTCAACCTTGACACCGGCTTTTCAAGTGACGAAGAAGACGAAAACCACGTCGCCGAACTCAACACCCTCATTCGCAAGGGAACCGCTGAATTGGAACCTTCAATCCACGACCCGCGCGACGATGGAACCTCCGACAACTGGATCCAGCGTAACGCCTCCCTCGTCCGTCTCACCGGAAAGCATCCCTTTAACTCAGAGCCACCGCTACAACGCCTCATGCACCATGGCTTCATCACACCTGTCCCTATCCACTACGTACGTAACCACGGGCCTGTTCCCAAGGCCCGCTGGGACGACTGGTCCGTAGAAGTGTGCGGGATGGTAAAACGTCCCGCACACTTCACAATGGACCAGCTCCTCCGCGAGTTCCCAAGCCGCGAATTCCCCGCAACGCTGGTGTGCGCGGGGAACCGGCGCAAGGAACAAAACATGGTGAAGCAGAGCATCGGGTTTAACTGGGGAGCAGCGGCGATATCCACGTCGGTGTGGAGAGGTGTGCCGTTAAGGAGTTTGTTGAAGCGGTGCGGGATCATGAGCAAAACGAAGGGCGCCCTCCACGTGTGCTTCGAGGGCGCTGAGGATCTGCCAGGTGGCGGTGGATCCAAGTACGGAACGAGTATCCTGAGAGAGGTTGCACTGGATCCCTCCCGCGATATAATCCTGGCTTACATGCAAAACGGCGAGCGTTTAGCGCCAGATCACGGTTTTCCCGTTCGAATGATCATCCCCGGGTTCATCGGTGGGCGCATGGTTAAATGGTTGAAACGGATTATCGTTACACCAAACCAATCTGACAGTTATTACCACTACAAAGATAACAGAGTACTCCCTTCCCATGTGGATGCTGAACTCGCCAATGCAGAAGCTTGGTGGTACAAGCCGGAGTATTTGATCAATGAGCTCAACATAAATTCTGTGATAACGACGCCGTGCCATGATGAGATTTTGCCTATAAACTCGTGGACTACTCAGAGGCCTTATGTACTTAAGGGATACGCATATTCTGGGGGTGGAAGAAAGGTGACACGTGTCGAAGTTACAATGGACGGTGGGGAGACGTGGCAAGTGTGTAGCTTAGAGCACGCAGAGAAGCCGAACAAGTACGGCAAGTACTGGTGCTGGTGCTTCTGGTCGTTGGAGGTGGAGGTGCTCGACCTGCTTGCTGCCAAGGAAATTGCTGTGCGTGCTTGGGACGAGTCACTCAACACCCAGCCTGAGAAGCTCATTTGGAATGTTATGGGGATGATGAACAACTGCTGGTTTAGGGTGAAAACCAACGTGTGCAAGGCTCACAAGGGCGAAATCGGAATTTCATTCGAGCACCCAACCCAACCGGGGAACCAATCCGGCGGGTGGATGGCGAAGGAGAGGCATCTGGAAAAATCTTCAGACACCACACCTTCCCTCAAGAAGAGTGTCTCCACTCCCTTCATGAACACCTCCTCCAAGAAGTTCTCCATCTCCGATGTCCAAAAGCACTGCACCGCGGAATCCGCATGGATCATCGTCCACGGCCACGTCTACGACTGCACTCGCTTCCTCAAGGACCATCCCGGCGGCACCGACAGCATCCTCATCAACGCCGGTACCGACTGCACCGAAGAGTTCGACGCCATCCACTCCGACAAAGCCAAGAAAATGCTCGAAGATTACCGCATCGGCGAGCTCATCAACACCGGCTACACTACCTCCTCCTCCGCCGATTCCTCCCCTAACACCACCGTCCATGGAAACACCGAAACCACTCATTTATCCCCGATCAAAGAAGTTACAACTCCGGTTACACCGCTCCGAAGAGTGGCACTGAACCCACGGGAGAAAATCCCATGCAAGCTAGTGCTCAAGAAATCCATCTCTCACGACGTTAGACTCTTCCGTTTCGCATTGCCGTCGGAGGACCAGGTCCTCGGCTTGCCAGTTGGCAAGCACGTTTTTGTTTGCGCGGACATTGACGGCAAGCTCTGCATGCGTGCCTACACTCCGTCGAGCGACGTGGACGAAGTGGGGCACTTTGATTTGGTGGTAAAGATTTATTTCAAGAACATGCATCCCAAGTTCCCTAACGGAGGACTCATGTCACAACATTTGGACTCGCTTCCTATTGGTTCTTTCTTGGAAATTAAAGGTCCATTGGGACACATAGAATACACGGGAAAAGGAAACTTCACGGTTCACGGAAACCACCGGTTTGCAAAGAGGCTTGCCATGCTGGCTGGTGGGACCGGAATCACGCCAATTTACCAAGTTGCCCAAGCCATACTGAAAGACCCTGAGGACCGAACCGAGATGCACGTGGTTTACGCGAACCGGAGCGAGGATGATATCTTGCTGAGGGAAGAGCTTGATGCGTGGGCCAAGAGCGATGAACGGTTCAAGGTTTGGTACGTTGTGGAGAACCAAAGGGAAGGGTGGGAATACAGTGTGGGGTTCATGACGGAGAGTATCTTGAGGGAGCATCTTCCTCCAGCATCGGAAGATACTTTGGCTTTGACTTGTGGGCCGCCACCAATGATTAAGTTTGCGGTGCAGCCCAATTTGGAAAAGATGGGGTATGACATTAAGAACAACTTGCTATTGTTTTAG 2778 0.5295 MAASVDNRQYPAPGLQVQTPLNGVVRTFKPSHNNNRSDSPIRGYNNNKLPQNTDFTRPEKSPDSPFNLDTGFSSDEEDENHVAELNTLIRKGTAELEPSIHDPRDDGTSDNWIQRNASLVRLTGKHPFNSEPPLQRLMHHGFITPVPIHYVRNHGPVPKARWDDWSVEVCGMVKRPAHFTMDQLLREFPSREFPATLVCAGNRRKEQNMVKQSIGFNWGAAAISTSVWRGVPLRSLLKRCGIMSKTKGALHVCFEGAEDLPGGGGSKYGTSILREVALDPSRDIILAYMQNGERLAPDHGFPVRMIIPGFIGGRMVKWLKRIIVTPNQSDSYYHYKDNRVLPSHVDAELANAEAWWYKPEYLINELNINSVITTPCHDEILPINSWTTQRPYVLKGYAYSGGGRKVTRVEVTMDGGETWQVCSLEHAEKPNKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDESLNTQPEKLIWNVMGMMNNCWFRVKTNVCKAHKGEIGISFEHPTQPGNQSGGWMAKERHLEKSSDTTPSLKKSVSTPFMNTSSKKFSISDVQKHCTAESAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELINTGYTTSSSADSSPNTTVHGNTETTHLSPIKEVTTPVTPLRRVALNPREKIPCKLVLKKSISHDVRLFRFALPSEDQVLGLPVGKHVFVCADIDGKLCMRAYTPSSDVDEVGHFDLVVKIYFKNMHPKFPNGGLMSQHLDSLPIGSFLEIKGPLGHIEYTGKGNFTVHGNHRFAKRLAMLAGGTGITPIYQVAQAILKDPEDRTEMHVVYANRSEDDILLREELDAWAKSDERFKVWYVVENQREGWEYSVGFMTESILREHLPPASEDTLALTCGPPPMIKFAVQPNLEKMGYDIKNNLLLF 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242857g00002 925 Gene3D - 777 920 IPR039261 -
Stsc242857g00002 925 MobiDBLite consensus disorder prediction 1 79 - -
Stsc242857g00002 925 PIRSF Nitr_rd_NADH 30 924 IPR012137 GO:0006809|GO:0042128|GO:0050464
Stsc242857g00002 925 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 102 363 IPR036374 -
Stsc242857g00002 925 Pfam Cytochrome b5-like Heme/Steroid binding domain 553 621 IPR001199 -
Stsc242857g00002 925 Gene3D Translation factors 663 776 - -
Stsc242857g00002 925 FunFam Nitrate reductase [NADH] 777 925 - -
Stsc242857g00002 925 MobiDBLite consensus disorder prediction 11 60 - -
Stsc242857g00002 925 PRINTS Cytochrome B5 reductase signature 722 729 - -
Stsc242857g00002 925 PRINTS Cytochrome B5 reductase signature 701 712 - -
Stsc242857g00002 925 PRINTS Cytochrome B5 reductase signature 767 781 - -
Stsc242857g00002 925 PRINTS Cytochrome B5 reductase signature 838 849 - -
Stsc242857g00002 925 PRINTS Cytochrome B5 reductase signature 893 901 - -
Stsc242857g00002 925 PRINTS Cytochrome B5 reductase signature 800 819 - -
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 394 408 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 435 445 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 363 375 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 195 206 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 408 420 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 473 486 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 120 134 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 312 325 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 296 309 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 460 472 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 221 236 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 206 218 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 142 158 IPR008335 GO:0016491
Stsc242857g00002 925 PRINTS Eukaryotic molybdopterin domain signature 279 295 IPR008335 GO:0016491
Stsc242857g00002 925 Pfam Oxidoreductase FAD-binding domain 675 781 IPR008333 -
Stsc242857g00002 925 SUPERFAMILY E set domains 365 492 IPR014756 -
Stsc242857g00002 925 PRINTS Cytochrome B5 signature 582 596 IPR001199 -
Stsc242857g00002 925 PRINTS Cytochrome B5 signature 597 604 IPR001199 -
Stsc242857g00002 925 PRINTS Cytochrome B5 signature 609 621 IPR001199 -
Stsc242857g00002 925 PRINTS Cytochrome B5 signature 572 582 IPR001199 -
Stsc242857g00002 925 FunFam Nitrate reductase 106 355 - -
Stsc242857g00002 925 Gene3D - 543 624 IPR036400 -
Stsc242857g00002 925 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 670 782 IPR017927 GO:0016491
Stsc242857g00002 925 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 770 919 IPR039261 -
Stsc242857g00002 925 Pfam Mo-co oxidoreductase dimerisation domain 361 492 IPR005066 GO:0016491|GO:0030151
Stsc242857g00002 925 Pfam Oxidoreductase NAD-binding domain 801 907 IPR001433 GO:0016491
Stsc242857g00002 925 PANTHER SULFITE REDUCTASE 89 495 - -
Stsc242857g00002 925 SUPERFAMILY Riboflavin synthase domain-like 663 783 IPR017938 -
Stsc242857g00002 925 FunFam NADH-cytochrome b5 reductase 661 776 - -
Stsc242857g00002 925 Gene3D - 365 539 - -
Stsc242857g00002 925 CDD eukary_NR_Moco 105 490 - -
Stsc242857g00002 925 FunFam Nitrate reductase 365 541 - -
Stsc242857g00002 925 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 546 625 IPR036400 -
Stsc242857g00002 925 Gene3D - 104 355 IPR036374 -
Stsc242857g00002 925 Pfam Oxidoreductase molybdopterin binding domain 154 333 IPR000572 -
Stsc242857g00002 925 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 547 622 IPR001199 -
Stsc242857g00002 925 FunFam Nitrate reductase 543 624 - -
Stsc242857g00002 925 CDD cyt_b5_reduct_like 675 925 - -
Stsc242857g00002 925 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 171 206 IPR022407 GO:0043546
Stsc242857g00002 925 SMART Cyt_b5_2 550 622 IPR001199 -
Stsc242857g00002 925 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 722 729 IPR001709 GO:0016491
Stsc242857g00002 925 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 838 849 IPR001709 GO:0016491
Stsc242857g00002 925 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 893 901 IPR001709 GO:0016491
Stsc242857g00002 925 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 581 591 IPR001709 GO:0016491
Stsc242857g00002 925 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 826 835 IPR001709 GO:0016491
Stsc242857g00002 925 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 869 885 IPR001709 GO:0016491
Stsc242857g00002 925 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 800 819 IPR001709 GO:0016491
Stsc242857g00002 925 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 578 585 IPR018506 GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242857g00002 Stsc-Chr242857 11198 16295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242857g00002 663 916 NADPH P450 reductases AT5G17770 41.634 3.42e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242857g00002 K10534 - qsa:O6P43_015229 1545.79