Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242851g00002 ATGGAGGGAAAGAAAACACCACCACCTCCACCACCACCACCTTCATTTTACGCACCCACCACCAGCACCAACACCAACGATTTCAGCTTTGTCAATGATTCCTTCTTTGAAAAGCCACCGAGTGAGGTGGTGAAGGTCGGGGACTTCGGTCCTTTCTTGTATGAGTGGTTAGGCATCGACGACGAGGATGCCATAGATCCCATCAATGCCGTCGATGCCGCTGTTCAAACACCGGTAAACCTCCCTCCTCCTTCGCCGTCACCCAGCTCAATTATTCTAGAATCTTCTCAAGTACTACCTCCTCCTATTCCCAATTCACAAAACTCACCAGTCTTTGACATAATCCCATCCGAATACGATCCCGGTAACACCAACACCACCGACACCACCAAAACTGCAGGGCGTAAACGTCGTGCAGAATCTGTTGCCGGCTACGGTGGAGATGGAAGAGTGAGTGGCGATGAAGGAGATGAGAATAATAAAACTAAAAATAGGCTGAAACTGAGAGCAGCAACCATGGCAAAAATTGCGGCCACCTTGACCATCCAGAGAAGGAGTGATAACAATGTTCCTAAATTCGCTTTCTTGACCGAAAGCGAAGACGAATACCTTGAAGATGGCTATAGATGGCGCAAATACGGCCAGAAAATGGTCAGAAACAGCCCTTTTCCAAGGAGCTACTATCGCTGCACGGCGGTGGGTTGCAGCGTGAAGAAGAGAGTGGAGAGGTCTCCGGATGATCCCACCCATGTGATGACCACCTATGAGGGCCTGCACTATCACGGTTTGCCTCCGGAGCTCCCTCCGCCGAGGCCCTTCAGCATTTACACCGACTCCGATGTTCCTATCACTGCCGCCAAACCTCCCGTCGCTAGAAGAGGCAGCCGCGGCAGCGGTGGCGGAGGCGGCGGTGGTGGTAGTGGTAGTGCAAGGGCAGGACATCATGCAAATAACACTATTACTAGTGTTAATGTTGAAAATGGAGCCATTGGCAGCGGTGACGATAGTGCTAGGGCAGGAAATCATGCTAATAACTCTGTTACTATTGTTAATGTTAATACTGGAGTCAACACCTGCGGCGGTGGTAGTGGTGTTGGTGACGGTGGCTCGAAGCACAGTGCGGCAATCCCAACTGACGTTTATGATCAGCAGATGCAGATTGTTGAACAAGCAGTTGCATCAGTACAGAGCTACAGTGCTCCAACGGCTCCCATGATTGATGTTACTCCTATGGATGTTACTGATAACCATGACCAATCTTTCCTGGATGTTGATCATTATGGAGACTTTTTTAGTGATGAAGACTTTTTTGGTGATGAAGACCTTTTTGGTGATTTATCTTTCAATGATTATAATGCATCATCATCATCTGCTTCTGGTGAGGACTTGGTTGGGAAGATTTGTACTGGGCTGCTTGAGGACATTATTAATTTCTCACCATCAATGGCACCTCACCCCCATGATCAACAACCATTTCTGTGGCCGTAA 1488 0.4872 MEGKKTPPPPPPPPSFYAPTTSTNTNDFSFVNDSFFEKPPSEVVKVGDFGPFLYEWLGIDDEDAIDPINAVDAAVQTPVNLPPPSPSPSSIILESSQVLPPPIPNSQNSPVFDIIPSEYDPGNTNTTDTTKTAGRKRRAESVAGYGGDGRVSGDEGDENNKTKNRLKLRAATMAKIAATLTIQRRSDNNVPKFAFLTESEDEYLEDGYRWRKYGQKMVRNSPFPRSYYRCTAVGCSVKKRVERSPDDPTHVMTTYEGLHYHGLPPELPPPRPFSIYTDSDVPITAAKPPVARRGSRGSGGGGGGGGSGSARAGHHANNTITSVNVENGAIGSGDDSARAGNHANNSVTIVNVNTGVNTCGGGSGVGDGGSKHSAAIPTDVYDQQMQIVEQAVASVQSYSAPTAPMIDVTPMDVTDNHDQSFLDVDHYGDFFSDEDFFGDEDLFGDLSFNDYNASSSSASGEDLVGKICTGLLEDIINFSPSMAPHPHDQQPFLWP 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242851g00002 495 MobiDBLite consensus disorder prediction 116 162 - -
Stsc242851g00002 495 MobiDBLite consensus disorder prediction 116 130 - -
Stsc242851g00002 495 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242851g00002 495 ProSiteProfiles WRKY domain profile. 199 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242851g00002 495 FunFam WRKY transcription factor 57 190 264 - -
Stsc242851g00002 495 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 100 279 IPR044810 GO:0003700
Stsc242851g00002 495 SMART WRKY_cls 204 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242851g00002 495 MobiDBLite consensus disorder prediction 1 18 - -
Stsc242851g00002 495 Gene3D WRKY domain 192 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc242851g00002 495 MobiDBLite consensus disorder prediction 285 315 - -
Stsc242851g00002 495 MobiDBLite consensus disorder prediction 1 24 - -
Stsc242851g00002 495 SUPERFAMILY WRKY DNA-binding domain 198 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242851g00002 Stsc-Chr242851 5308 7833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242851g00002 192 264 WRKY Transcription Factor Family AT5G49520 73.973 9.06e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc242851g00002 WRKY 7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242851g00002 - - adu:107483375 279.641