Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242849g00002 ATGGGTTCCACGGCGGATACACTACCAGCTAAACGCCCCGCTTCAACTGGATATTCTTCTGAGCGACACAAAAGACTGAAATTGTCATCTGATGGCTCCCCCTACTCAAATGTTGTGGATTATAGTGACCCATTTGCAATATCTTCAGTTCTGAATCAGTTTGATAGTGGGAAATTTGGAAGTGTCACGAAGGACATAGAGGCCCTCCGAGAGAAGAAAATGCAAATGTTGGGCCCATACTTTGCAAAGTATCCTTCCCTGATCAATCAATTATTGAAAGTGACAACCAATCATAGTGAAGAAACTGCCAAGCTAGAAATTGTACAAGTTACTAGTGCACATCAGCATGTTAAGAAGGGTGAGCAGATTAAGAAGGATGTTCCTGTGGCACCATCATCTATTGTAATTATTGATTCAGATGATGAGGATGATAGTGATAAAAAACCCGATCCTCGATTTAATCAAGTAATGTTGCCTGTACCAATAAGACCGTCTCCGGCACTGCAAATGAATGAATACCCTGCTTCCATTGAATTCAATGGGAAAAGTAAAGATCCAAAAATTGAGAAAAGTTTGGATGCTCAAGGTAAGAGTCCCAGAGACAAAGGTATCTATGTTGGTGTACAGGAGGAAGAAGATGAGGTTGAAAACAAAGATGATGGATTAGATGATATTTGGCGGGAAATGTCCATGTCCATGGCTATAGAATGTTCCAAGGATGATTCTATGAATGTGTCGGATGAAGAAGAGGAAAAGGAGGAAGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTATGTGGGGTTATCAAAAGAAGAATTGAGACCATATTTGAGTTTCAGTTCAAGGTTAAAAAGAGTACAAGGACTTATGCGTCTGATTCACGGAGTTCCAAAGAGAAAGGTGACATATTTGGGATCCACGTGGCTGAAGATGATCTTGTAGTGACTGATATTTCTGCACATCCCAGGCATATGAAGCAAATGAAGCCTCATCAAATTGAGGGATTTAATTTTCTCGTTAGGAACCTTGCGGGTGAGAATCCTGGGGGTTGCATCTTGGCCCATGCTCCTGGATCAGGGAAGACTTTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGCAAGTATCCCAATGGTAGACCGCTAGTGGTGCTTCCCAAGGGAATATTATCAATTTGGAAAAAGGAATTCCAGAGATGGCAAGTTGAGGATATACCGCTTCTGGATTTTTATAGTGTGAAGGCTGACAATAGATCTCAGCAACTGGAAGTTTTGAGAAAATGGAAGGACCAGAAGAGTATCCTTTTCCTAGGATACAAACAGTTCTCCACAGTTGTTTGTGATGATTCCGCCAGCGGAGCATCAATAGACTGCAAGGAGATATTGCTCAAGGTTCCTTCTATTCTGATTTTAGATGAAGGGCACACTCCTAGGAATGAGAATACTGATATCATGCAATCCCTTACCAAGGTTCTGACACCTCGAAAAGTTGTACTGTCAGGAACTTTATATCAGAATCATGTGCAGGAGGTGTTTAACATCTTGGAGCTGGTGCGGCCTAAATTTTTAAATATGGAAACTTCTAAGCCTATTGTAAGGCGCATTAAAAGCAGAGTGCATGTACCTGCTGGTGTTAAAAATACTTTGTGTGATGTGGTTGAATATACTTTGCAGAAGGATATCGATTTCAAAAGAAAGGTGAACGTCATTCATGATTTGCGTGAGATGACAAGCAAGGTGCTTCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCAGGTCTGGTTGATTTCACAGTGGTGCTCAACCTTACCTCTAGACAGAAGCATGAAGTTGAGAAATTGAAGCAGCTTTCCAGGAAGTTCAAAATATCTTCTGTTGGCAGTGCTACCTATCTTCATCCCATGTTGAAACCTGTTGCTGAAAAATGCGGTGAGAACTCAATATCTGATAACATCATCAATGAGTTGATTGATAAACTAGATGTGAAAGATGGTGTCAAGTCAAAATTCTTTCGCAACATGCTCAAAATGTGTGAGTCTGCTGGGGAGAAGCTTCTGGTTTTCAGTCAATATCTCCTACCTCTGAAATATTTGGAAAGGTTAGCAGCAAAATGGAATGGATGGAGCGTTAACAGAGAAATTTTCGTCATCTCAGGAGAATCAAGCCCTGAACAACGGGAGTTTTCGATGGAAAAGTTCAACAGCTCGGCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGGGAGGGCATATCACTGGTTGGGGCATCCCGAGTAATTATTTTGGATGTTCATCTCAATCCGTCAGTTACTCGCCAAGCTATTGGCCGCGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGTATATCGGTTGGTGGCAGCAGATTCTCCAGAAGAGGAAGATCATACTACTTGTTTCAAGAAGGAGTTGATTTCAAAGATGTGGTTTGAATGGAACGAGTATTGTGGTGATAGAGCTTTCGAAGTGGAGAACGTTCCAGTGAATGAATGTGGTGATCTCTTCCTCGAAAGTCATTCATTAGCTGAAGATATTAAATCTCTATATAGAAGGTAA 2607 0.4104 MGSTADTLPAKRPASTGYSSERHKRLKLSSDGSPYSNVVDYSDPFAISSVLNQFDSGKFGSVTKDIEALREKKMQMLGPYFAKYPSLINQLLKVTTNHSEETAKLEIVQVTSAHQHVKKGEQIKKDVPVAPSSIVIIDSDDEDDSDKKPDPRFNQVMLPVPIRPSPALQMNEYPASIEFNGKSKDPKIEKSLDAQGKSPRDKGIYVGVQEEEDEVENKDDGLDDIWREMSMSMAIECSKDDSMNVSDEEEEKEEDCDHSFVLKDDLGYVCRVCGVIKRRIETIFEFQFKVKKSTRTYASDSRSSKEKGDIFGIHVAEDDLVVTDISAHPRHMKQMKPHQIEGFNFLVRNLAGENPGGCILAHAPGSGKTFMIISFMQSFLGKYPNGRPLVVLPKGILSIWKKEFQRWQVEDIPLLDFYSVKADNRSQQLEVLRKWKDQKSILFLGYKQFSTVVCDDSASGASIDCKEILLKVPSILILDEGHTPRNENTDIMQSLTKVLTPRKVVLSGTLYQNHVQEVFNILELVRPKFLNMETSKPIVRRIKSRVHVPAGVKNTLCDVVEYTLQKDIDFKRKVNVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLTSRQKHEVEKLKQLSRKFKISSVGSATYLHPMLKPVAEKCGENSISDNIINELIDKLDVKDGVKSKFFRNMLKMCESAGEKLLVFSQYLLPLKYLERLAAKWNGWSVNREIFVISGESSPEQREFSMEKFNSSADAKVFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLVAADSPEEEDHTTCFKKELISKMWFEWNEYCGDRAFEVENVPVNECGDLFLESHSLAEDIKSLYRR 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242849g00002 868 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 678 851 IPR001650 -
Stsc242849g00002 868 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 193 867 IPR044567 GO:0080188
Stsc242849g00002 868 Gene3D - 304 552 IPR038718 -
Stsc242849g00002 868 MobiDBLite consensus disorder prediction 178 202 - -
Stsc242849g00002 868 Pfam Helicase conserved C-terminal domain 682 791 IPR001650 -
Stsc242849g00002 868 SMART ultradead3 331 541 IPR014001 -
Stsc242849g00002 868 MobiDBLite consensus disorder prediction 137 158 - -
Stsc242849g00002 868 Pfam SNF2-related domain 354 617 IPR000330 GO:0005524|GO:0140658
Stsc242849g00002 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 530 IPR027417 -
Stsc242849g00002 868 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 349 528 IPR014001 -
Stsc242849g00002 868 MobiDBLite consensus disorder prediction 182 197 - -
Stsc242849g00002 868 Gene3D - 600 858 IPR027417 -
Stsc242849g00002 868 CDD SF2_C_SNF 666 803 - -
Stsc242849g00002 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 830 IPR027417 -
Stsc242849g00002 868 MobiDBLite consensus disorder prediction 1 30 - -
Stsc242849g00002 868 SMART helicmild6 707 792 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242849g00002 Stsc-Chr242849 8391 14853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242849g00002 670 810 RAD5 or RAD16-like Gene Family AT5G43530 34.247 1.43e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc242849g00002 SNF2_N 8.3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242849g00002 K10875 - gmx:100780454 1236.09