Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242836g00001 ATGGCTCTTCACCGTCCACACCTTTTATTGCTAGACACAAGTTCAAGCTCTGGTGATGCAAATAGGACAAAAGATTCCTCCATAGGCGACCCGAATTTCGACACCAACATGGTGATTATCTTGGCTGCCCTGCTCTGTGCACTCATATGTGCTTTAGGACTCAACTCGATAGTGCGTTGTGCTCTAAGATGTAGCCGAAGGTTGGCTTTCGAGACTCCGGACGAAGCAGCAGCGCGATTATCGGTTAAAGGGTTGAAGAAGAGTGCTCTGCATCAGATTCCTATAGTTGTATATGGTAATTCAGGTACTAGTAGTAGTAGTGTTAAAGCCACTGATTGTGCAATTTGCCTGGGGGAGTTTATGAATGGAGAAAAGGTTAGAGTGCTACCAAAATGTAACCATGGATTCCATGTTAAGTGTGTAGATACATGGCTGCAATCACACTCCTCTTGCCCTACTTGTAGAAGGTGTTTACTTGAGCAACCAGCAACAGCTTCTGAAGTTGCAACTGTGGCCGTTGCAGTGGCTGCAGCTTCAGGAACAAGGAATCATCATGCTGATAATAATGCATCAGAGGGGCATCAACCTGATCATGTAGCTGTAGTTGTGGATGAGATTGGCTAA 624 0.4535 MALHRPHLLLLDTSSSSGDANRTKDSSIGDPNFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETPDEAAARLSVKGLKKSALHQIPIVVYGNSGTSSSSVKATDCAICLGEFMNGEKVRVLPKCNHGFHVKCVDTWLQSHSSCPTCRRCLLEQPATASEVATVAVAVAAASGTRNHHADNNASEGHQPDHVAVVVDEIG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242836g00001 207 CDD RING-H2_EL5-like 112 155 - -
Stsc242836g00001 207 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Stsc242836g00001 207 FunFam E3 ubiquitin-protein ligase ATL6 74 161 - -
Stsc242836g00001 207 SUPERFAMILY RING/U-box 112 162 - -
Stsc242836g00001 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Stsc242836g00001 207 SMART ring_2 113 154 IPR001841 -
Stsc242836g00001 207 PANTHER RING-H2 FINGER PROTEIN ATL78 24 176 IPR044602 GO:0016567|GO:0016740
Stsc242836g00001 207 Pfam Ring finger domain 112 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242836g00001 Stsc-Chr242836 8447 9803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242836g00001 7 163 C3H Transcription Factor Family AT3G10910 55.952 6.11e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242836g00001 - K19040 qsa:O6P43_020103 248.825